Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212282g00002 ATGGGAATTCAAGAGAAAGACCCTCTCTCGCAGTTGAGTTTACCGCCGGGCTTCCGATTTTACCCAACGGATGAGGAGCTTCTCGTTCAGTATCTGTGCCGGAAGGTTGCTGGCCATCATTTCTCCCTGGAAATCATCGGCGAAATCGATTTGTATAAGTTCGACCCGTGGATCCTTCCAGGTAAGGCCATTTTCGGGGAAAAGGAATGGTACTTCTTTAGTCCTCGAGACAGAAAATACCCTAATGGTTCCCGGCCTAATAGGGTGGCTGGGTCAGGCTACTGGAAAGCCACCGGAACCGATAAGATTATTACCACCGAAGGTAGAAAAGTTGGAATCAAGAAAGCCTTGGTTTTCTACATTGGCAAGGCACCAAAAGGAACCAAAACCAATTGGATTATGCACGAGTATCGCCTCCTAGACTCTACCCGCAAGAACGGCAGCTCCAAGCTTGACGATTGGGTTCTGTGCCGTATATACAAGAAGAATTCAAGCTCGCAGCAGAAGGTACCAAACGGCGTCGTTTCGAGTAGCGAGCAATACGCCACGCAATACAGCAACGGATCTTCATCGAACTCCTCTTCCTCCCACCTCGACGAGGTGCTTGAGTCACTGCCGGAGATCCACGACCGTTGCTTTGCCCTGCCACGTGTCAACTCCTTAAGAGCGCTTCAGCACCACCACCAAGAAGACACCAAGGTCGGTCTACTCCAGCAGCATCAGCATCAGCAGCAGCAACAGGGTCTCGTATCCGGCGCCGGTAGCTTCTTGGAATGGGCTTCAGGCCCAGGGATTCTGAACGAATTGGGCCAGGCCCAAGACGGGTTTGTTAACTATGGAAATGACCTCTTTGTCCCTTCTAACATGGTGCCAGCAAAGATAGAAGAGGAGGTTCAAAGCGGTGTGAAGAATAATACTCAATCCGCATTCTTTCAGCAGGGACCGAACCCAAATGACTTCACACAAGGATTCTCAAACCAACTCGATCCGTATGGGTTTAGTCGGTACCCGGTCCAACCGGTTGGCTTCGGGTTCAGGCAATGA 1044 0.5077 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLEIIGEIDLYKFDPWILPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSTRKNGSSKLDDWVLCRIYKKNSSSQQKVPNGVVSSSEQYATQYSNGSSSNSSSSHLDEVLESLPEIHDRCFALPRVNSLRALQHHHQEDTKVGLLQQHQHQQQQQGLVSGAGSFLEWASGPGILNELGQAQDGFVNYGNDLFVPSNMVPAKIEEEVQSGVKNNTQSAFFQQGPNPNDFTQGFSNQLDPYGFSRYPVQPVGFGFRQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212282g00002 347 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Stsc212282g00002 347 FunFam NAC domain-containing protein 72-like 23 167 - -
Stsc212282g00002 347 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Stsc212282g00002 347 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Stsc212282g00002 347 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Stsc212282g00002 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212282g00002 Stsc-Chr212282 20829 22832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212282g00002 1 224 NAC Transcription Factor Family AT4G27410 72.614 4.04e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc212282g00002 NAM 2.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212282g00002 - - gmx:100170718 462.225