Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212282g00001 ATGGTGGACATTGAATCTCAAACAACTCATCATCAAGAAGTGCCTAACAATGTCTTCCACAAGAGAAAAACTCCAGTAACTCTCAAGTTTGAAGATGTTGTGTACAAGATCAAGATTGAGCATGGTGGATTATTGGACAAGAAGAAAAAGACAGAACGCAAAGTCATATTGAATGGGGTAACCGGAATGGTTCAACCGGGTGAGATCCTGGCCATGTTGGGTCCCTCAGGAAGCGGCAAGACAACACTTCTAACCGCGTTAGGCGGCCGGCTCGGCGGCCGCCTCAACGGAAAGATAACCTATAACGGAAACCCCTTCAGCAATGCCATGAAGAGGAACACCGGCTTTGTCACACAAGATGATGTCCTACACCCTCATCTTACTGTAACTGAAACCCTTGTTTTCACCGCTCTCCTCCGGCTACCGAACACGGTAGCCAAGGAGGAGAAAGTGGAGTTGGCGAAAACCGTGATGAACCAACTTGGGTTGATCAAGTGTAAGGACAGTATTGTGGGAGGACCCGGTCTTAGAGGGGTTTCGGGTGGAGAAAGGAAAAGGGTTAGTGTTGGTCAAGAATTGCTCATAAACCCTAGTTTGTTGTTCCTTGATGAACCTACCTCAGGTTTGGATTCAACTACAGCACTAAGGCTTGTGTCAACTTTGTTTGAGCTTGCAAGAGGAGGAAGAACTATTGTGATGACAATACACCAACCTTCTAGTAGGTTGTTCTATATGTTCACTAAGGTCTTGCTTCTTTCAGAAGGGAACACTCTGTATTTTGGAATGGGCTCTGAGGCTTTGGATTATTTCTCTGCTGTTGGATTTTCTCCATCATTAGCCATGAACCCTGCTGATTTCCTTCTGGATCTTGCCAATGGAATTTACACCAATGAATTGAATGAGGATGTTGAGGTGGAAAAACAAGAATTGATTCAAGCATTCAAGAGGCACTACAATGACTCTCAATTGAGGCCAATGTTGCAAGAAACCAATAGCAATAATAATTCATCATCAAATAGTAGAGTTGAGGCCACTGCAGCAGGGTTTGGGAAATGGCCTACAAATTGGTGGCAACAATTCCATGTGCTGTTGAGAAGAGACCTTAAAGAGAGAAGGCACGAAGCTTTCGCTTCCTTCAATGTTATCCAGATCCTCGTCACTTCTTTCATTGTAGGACTATTGTGGTACAAGTCTGATACCTCACACATTCAAGATCAGCTTGGGCTTCTGTTCTTCATAGCAAATTTCTGGGCATTTTATCCTCTGTACAGAGCAATCTTCGTCTTCCCAGACGAAAGAGTGATGCTGGTGAAAGAAAGATCTTCAGGAATGTACAGACTATCATCATACTACATGGCAAAAACAATGGTAGACCTTCCAATGGAACTCGTTCTCCCAGCCGTTTCCATCATCATAATCTACTGGATGGCAGGCCTCAAAGCCACCGCGGCCGCCTTCATCTTCACCCTCCTCATCACCCTAACCCTTGTGTTAGTCTCTCAGGGGGTAGGCCTCGCCCTCGGGGCCTACCTCGAGAACACTAAGGTCGCCACCACCTTTGCTTCCGTGATTGGACTAACCTTCATGATAACTAGTGGATTCTTGGTCCAGAATGTTCCCGCATTCATCGCATGGGTTAAATACTTGTCCTTCATATATTACGCGAGCGAGCTTCTAATCTTTGCTCAGTACCATCAAGATCAGACTTACCATTGCCCTGGTGGCGGTAACTGCTTGATTTATGACTACTCTGGAATTAAGGGTCTAGGGTTCGTTAATAACAGGGAGAATCAATTAAGGGCTTCACTGCTTTTGCTGGCAATGCTTTTTATCTATAGGATTATGGCTTATGTTGCTCTTATGAGAATTGGAAACACAAAGAAATCCAAGCCTGCATGA 1899 0.4481 MVDIESQTTHHQEVPNNVFHKRKTPVTLKFEDVVYKIKIEHGGLLDKKKKTERKVILNGVTGMVQPGEILAMLGPSGSGKTTLLTALGGRLGGRLNGKITYNGNPFSNAMKRNTGFVTQDDVLHPHLTVTETLVFTALLRLPNTVAKEEKVELAKTVMNQLGLIKCKDSIVGGPGLRGVSGGERKRVSVGQELLINPSLLFLDEPTSGLDSTTALRLVSTLFELARGGRTIVMTIHQPSSRLFYMFTKVLLLSEGNTLYFGMGSEALDYFSAVGFSPSLAMNPADFLLDLANGIYTNELNEDVEVEKQELIQAFKRHYNDSQLRPMLQETNSNNNSSSNSRVEATAAGFGKWPTNWWQQFHVLLRRDLKERRHEAFASFNVIQILVTSFIVGLLWYKSDTSHIQDQLGLLFFIANFWAFYPLYRAIFVFPDERVMLVKERSSGMYRLSSYYMAKTMVDLPMELVLPAVSIIIIYWMAGLKATAAAFIFTLLITLTLVLVSQGVGLALGAYLENTKVATTFASVIGLTFMITSGFLVQNVPAFIAWVKYLSFIYYASELLIFAQYHQDQTYHCPGGGNCLIYDYSGIKGLGFVNNRENQLRASLLLLAMLFIYRIMAYVALMRIGNTKKSKPA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212282g00001 632 SMART AAA_5 66 256 IPR003593 GO:0016887
Stsc212282g00001 632 Pfam ABC-2 type transporter 358 563 IPR013525 GO:0016020|GO:0140359
Stsc212282g00001 632 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Stsc212282g00001 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 271 IPR027417 -
Stsc212282g00001 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 279 IPR003439 GO:0005524
Stsc212282g00001 632 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Stsc212282g00001 632 Gene3D - 44 272 IPR027417 -
Stsc212282g00001 632 FunFam ABC transporter G family member 22 44 273 - -
Stsc212282g00001 632 Pfam ABC-2 type transporter 236 339 IPR043926 GO:0140359
Stsc212282g00001 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212282g00001 Stsc-Chr212282 5429 9216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212282g00001 56 240 Calmodulin-binding Proteins AT2G36910 30.729 2.15e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212282g00001 K05681 - gmx:100816135 759.214