Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212281g00002 ATGATGTACTCCCTAGAATGCTTTGCTTTATTTCTTGCTATCATCTCATTCTTTTTCATCCACATTTGGCGAATCCATCGAAACTTGCCTATTCCAAATTTGCCCTTACTTGGTATGTTACCAGCTATTTTGTTTAATGTCTCCAATATTCATGAATATGCTACCACAGCTTTGAAACACTATGGAGGTACTTTAAAGGTTAGAGGACCCTTGTTCACTAACATCAACTTTTTAATCACTAGTGATCCTATGAATCTGCACCACATTACAAGTAAGAACTTTGTCAACTATGGCAAAGGTTCTGAGTTCCATCAAATTTTTGAAATTCTTGGAGATGGGATCTTTAATTCTGATTCACACAATTGGAAGTACCAGAGACAGTTATTACAATCACTGTTTAAGAAAAACATCTTCGGGAACTTTGTTAGAAAAGTCATTCATAAGAAATTAGATGATTATTTACTTCCACTTTTGAATGAGGTTTCAGAATCAAGAACTTTTGTAGACTTGCAAGACATCTTTCAAAGATTCACTTTTGATATTATTTGCTCCATAGTCTTAGCATTTGACCCCAATTGCCTTCCCAACAAGCTCTCTCAATTCCCTGAGGTTGCTGTTGAGAAAGCTTTCAACAAAATGGAGGATGCAATCCTTTATAGACACCTCGCCCCAAGATGGTTATGGAAGCTACAGAGATGGCTCCGAATTGGACATGAGAGGGACTCTATTTCTTGCCAACAAATTCTGGAGCAATTCTTCCGTGATCGAATATCAGTCCCTGGAGAAGAGAAAAGCAGATTCAACAACTACATCAAAGATGATGATGAATCAAACTTTGACATGATAAAATCTCTTGTGGAGGAAGGTGGAATGGAACAAGTAGATTACAAGTTTCTAAGAGACACTGCAATGAATCTCTTAGCAGCGGGAAGGGACACAATTAGTGCAAGTTTATGTTGGTTTTTATGGCTTGTTTCAACTCACCCTAATGTTGAAACCAAGATCCTTGAAGAAATCAGAGAAAAGTTTAAAACAAACGAAGAAAATTGGCTCATTTCAGAGGTGGAAGACCTTGACAAGCTAATTTACTTGCATGGAGCTATATGTGAAGCATTGAGGCTTTACCCTCCAGTTCCATTTGAGCACAAATGTGCCATCAAATCTGATATACTTCCAAATGGAGATCCTGTTGATGCAAATACTATGGTGCTTTACTCCATATACTCAATGGGAAGGATGGAAGAAATATGGGGAAATGATTGCTTGGAATTTAAACCTGAAAGGTGGATTTCGGAAAAAGGAATGAATATACAGGTACCATCATACAAGTTCATGGCTTTTAATGCAGGCCCCAGAAGTTGTTTGGGGAAAAATATAAGCTTTATTCAGTTGAAAATCATTGCCATTGCTTTGCTGTGGAACTTTCACTTCCAAGTGGTGGAAGGGCATTCAGTGTGTCCAAGTGTTTCTGTTATTCTACACATGAAGCATGGGTTGCATGTCAGGGTTACTAAAAGAGGCAACTGA 1527 0.3792 MMYSLECFALFLAIISFFFIHIWRIHRNLPIPNLPLLGMLPAILFNVSNIHEYATTALKHYGGTLKVRGPLFTNINFLITSDPMNLHHITSKNFVNYGKGSEFHQIFEILGDGIFNSDSHNWKYQRQLLQSLFKKNIFGNFVRKVIHKKLDDYLLPLLNEVSESRTFVDLQDIFQRFTFDIICSIVLAFDPNCLPNKLSQFPEVAVEKAFNKMEDAILYRHLAPRWLWKLQRWLRIGHERDSISCQQILEQFFRDRISVPGEEKSRFNNYIKDDDESNFDMIKSLVEEGGMEQVDYKFLRDTAMNLLAAGRDTISASLCWFLWLVSTHPNVETKILEEIREKFKTNEENWLISEVEDLDKLIYLHGAICEALRLYPPVPFEHKCAIKSDILPNGDPVDANTMVLYSIYSMGRMEEIWGNDCLEFKPERWISEKGMNIQVPSYKFMAFNAGPRSCLGKNISFIQLKIIAIALLWNFHFQVVEGHSVCPSVSVILHMKHGLHVRVTKRGN 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212281g00002 508 CDD CYP86A 68 499 - -
Stsc212281g00002 508 PANTHER CYTOCHROME P450 22 501 - -
Stsc212281g00002 508 SUPERFAMILY Cytochrome P450 31 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 Pfam Cytochrome P450 32 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Stsc212281g00002 508 Gene3D Cytochrome P450 21 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212281g00002 508 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212281g00002 Stsc-Chr212281 19314 20840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212281g00002 10 508 Cytochrome P450 AT2G23180 42.801 1.07e-153 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212281g00002 - - gmx:100791312 584.334