Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212280g00001 ATGGAGTGGAATGAAAGCACAAGATCCTTTGTTCCTCGTGCTGAGCCTTCACTAAGCTTCTTTTACAACTATAGCAGTAGCAGCAACAATCACAACAACAGCAACCCATCATACCCAGGAAGTGAAGTGAAAGAAGCAGCATTGGTGGAGACACCACAGGAGTTGCTTCATGCAATGGAGGAGATGAAGTACGCGAGCCAGCGAGAGAAGAAGAAGAGATTAACAAGCAGTCAGATTGAGTCACTGGAGAGAAGCTTCCAGGAGGAGATAAAGTTGGACACTGACAGGAAGATGAAGCTTTCCAGGGAGCTTGGCCTTCAACCTCGCCAAATCGCGGTTTGGTTCCAGAATAGGCGAACAAGGTGGAAGGCCAAGCAACTTGAACACTTGTACTTTGCCCTTAAACAAGAATTTGATCTCATCTCCAGCGAGAAGCACAAGCTTCAAGAAGAGGTTATGAGGTTGAAGGCAAGGCTAAGAGAGCAAGCATTTAGAACACATGTATCTGCTGGTGTTTACACAGAAATGTGTGGGGCAGAAACAGTAGAAAGCACGTCAGAGATGTTGCATGGATCAAAGGGAATGATTAGTAGTAGTAATAATAATAACAATCAGCAGATTACAGATGGCTACTGCAGTTTCCCTGTGGAGGATCATCAAAACAATAATGTTCCTCTGCCTAACTGGGCTGTTGCGCCTTATTGTCCCTAA 711 0.4501 MEWNESTRSFVPRAEPSLSFFYNYSSSSNNHNNSNPSYPGSEVKEAALVETPQELLHAMEEMKYASQREKKKRLTSSQIESLERSFQEEIKLDTDRKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYFALKQEFDLISSEKHKLQEEVMRLKARLREQAFRTHVSAGVYTEMCGAETVESTSEMLHGSKGMISSSNNNNNQQITDGYCSFPVEDHQNNNVPLPNWAVAPYCP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212280g00001 236 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Stsc212280g00001 236 Gene3D - 57 129 - -
Stsc212280g00001 236 CDD homeodomain 68 126 IPR001356 GO:0003677
Stsc212280g00001 236 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 193 IPR045224 GO:0003700
Stsc212280g00001 236 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Stsc212280g00001 236 Coils Coil 138 165 - -
Stsc212280g00001 236 SUPERFAMILY Homeodomain-like 57 127 IPR009057 -
Stsc212280g00001 236 PRINTS Lambda-repressor HTH signature 96 105 IPR000047 GO:0003677
Stsc212280g00001 236 PRINTS Lambda-repressor HTH signature 105 121 IPR000047 GO:0003677
Stsc212280g00001 236 SMART HOX_1 67 129 IPR001356 GO:0003677
Stsc212280g00001 236 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Stsc212280g00001 236 FunFam Putative homeobox-leucine zipper protein ATHB-51 67 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212280g00001 Stsc-Chr212280 10029 11325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212280g00001 9 163 Homeobox Transcription Factor Family AT2G36610 48.571 2.60e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc212280g00001 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212280g00001 - - ahf:112757138 311.997