Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212278g00002 ATGGCGGAAGAGCATCGATGCCAAGCTCCAGAAGGTCACAGGCTCTGCGTCAACAACTGCGGCTTCTTCGGTAGCCCAGCCACCATGAATCTCTGCTCCAAATGCTTCAGAGAACAAGAATCCGCAAAATCCACAATCGAAAACGCTCTCTCCACCGCCACCGCCACCGCAACCGCAGCATCCTCCGTCGCTGCCGTAGAATCCGCCTTTCCATCTCCGGCACCGTCGACGTCGTCTTCTCCGGCGCCAACGCCAGCTGTCGTTGTCGAAACCTCTGTTCCTCAACCGGTTGAGCTAGAATCTTCGAGCTCCGTAACCGTTTCCGTAACGGTTACATCGAATCCCGGAGTTCCGGTTCAGGCGAACCGGTGCGCAACGTGCCGTAAACGCGTCGGGTTGACCGGGTTTAAGTGCAGGTGCGGTGTCACGTTCTGTGGGGCCCACAGATACCCGGAGAAACACGCGTGCAGTTTCGATTTCAAGACGGTGGGAAGAGAGGAGATAGCACGTGCCAACCCCGTGATCAAGGCGGAGAAACTCGATAGGATCTGA 552 0.5707 MAEEHRCQAPEGHRLCVNNCGFFGSPATMNLCSKCFREQESAKSTIENALSTATATATAASSVAAVESAFPSPAPSTSSSPAPTPAVVVETSVPQPVELESSSSVTVSVTVTSNPGVPVQANRCATCRKRVGLTGFKCRCGVTFCGAHRYPEKHACSFDFKTVGREEIARANPVIKAEKLDRI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212278g00002 183 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Stsc212278g00002 183 FunFam Zinc finger AN1-type containing 6 98 179 - -
Stsc212278g00002 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 46 - -
Stsc212278g00002 183 ProSiteProfiles Zinc finger AN1-type profile. 118 164 IPR000058 GO:0008270
Stsc212278g00002 183 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Stsc212278g00002 183 Gene3D - 100 179 IPR035896 -
Stsc212278g00002 183 Gene3D - 1 69 - -
Stsc212278g00002 183 SMART AN1_Zf_4 124 161 IPR000058 GO:0008270
Stsc212278g00002 183 SUPERFAMILY AN1-like Zinc finger 117 178 IPR035896 -
Stsc212278g00002 183 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Stsc212278g00002 183 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 183 - -
Stsc212278g00002 183 Pfam AN1-like Zinc finger 124 160 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212278g00002 Stsc-Chr212278 7917 9721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212278g00002 1 183 C2H2 Transcription Factor Family AT3G52800 49.180 2.07e-51 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212278g00002 - - gmx:100789686 206.068