Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212274g00003 ATGAAGATCATAGAGCAGCACTTTCTTCTATTCCTCATCACTACAATAATTCTTATTACACAATCCGTAAATGTAAATGCTCTAAGAAATTGTGAAGATTGTGGGCACATGAAAGTACCATTCCCACTAAGCACATCTCCAAATTGTGGGGACCAAAATTACAAGATCAGGTGCAATTCCGGCACGCTTTGGTTCGACACAATCAACGGTTCCTCCTACATCATCACCTCCATCAATCCCACGTTTCAGCGTCTTGTGATTCAGCCTCCGGGTTTGGCCAACAACACGTGCATGTCACGTGACTTCAAGAACGAAGGGATGTGGCTCGACACAAACTCACCCTTCAACATTACTTCCAGCAACACTTTGATCCTCATGAACTGCTCCCAAGAGATCTTGACCATGTTATTCAACTGTTCCTCAACCAGCATTTGCCATAAGTATGTTCAGGAGGGCAATCCCGTCATTTCCAAGGCTTGTGGCCCGACGAGCCGCGCCTCCAAATTGTGCTGCGACATAAAGACCGGTGGGTCTGCGACAGCACATAGGATTAGGGTTAGGGATGATCGTTGTGCGGCGTATGCTAGCTTTCCCAATTTAGATCCCTCGTTGCCAGTCAGTATGTGGCGGCCGGGGGTGGAGATAGAGTGGCAGCTGCCGACCGAGCCACCGTGCAAGGTAGCGGGGGATTGCTTGGATTTGGCGAACTCTGGTTGTAGAGGAGGGAAATGCTTGTGCAATGCTGGCTTTCACTGGGATCCTGTGAATGGAAAATGCCAAGATACCAAGTGTCAGCATGGAAGCGGATGCAAGCTTAGTAAGAAATCCCCGCTTATTGGAGGGTTGATATTGGCTGGGACTATCTTGGTAGCAGGAGCCATGTTCACTGCAATGGGGTATTACTTTCAGAGGAAAAGGATGAAAAGAGAGATCCAAAAAAGAATAACAAGCAAAGCAAACTTGATACTGAACTCAGACAATAACAACGGCAGATCCGCAAAAGTGTTCACCATAAAGGAAATCACAAAAGCAACTAACAACTTCTCCAAATCTAACCTCCTCGGTGCAGGCGGCTTCGGCGAGGTATTCAAGGGTGTTCTCGACGATGGAACTGTCATAGCCATCAAGAGAGCAAAGCATGGCAACATAAGAGGCATTGATCAAATCCTGAACGAGGTTAAGATCCTTTGCCAGGTCAACCATAGAAGCTTAGTGAGGCTATTGGGATGCTGTGTTGAGCTTCCAAATGAGCCTGTTCTTGTCTATGAGTATGTCTCTAATGGCACCTTGTTTGAGCACCTTCACAACAAAAACTCCAGCAAATGGATCCGTCTTGGATGGCATTCAAGGCTAAGAATCGCACACCAAACCGCTGAAGGGCTTGCCTATCTTCACGATGCAGCCATACCCAAAATCTACCACAGAGATATCAAGTCAAGCAACATTCTCTTAGACGAAAAACTCGATGCAAAGGTCTCTGATTTCGGGCTTTCGAAGTTAGCGGCCACCGAAGCTAGCCACATAACAACGTGCGCTCAGGGAACACTGGGCTATCTTGATCCAGACTACTATGTGAACTTTCAGCTCACGGAGAAAAGTGACGTGTATAGCTTCGGTGTTGTTCTGTTAGAGCTACTGAGCTCTAAGAAGGCTATTGATTTCAATAGAGAAGAGGATGATGTGAATTTGGTGGTTATGGTGAAGAAGGCCTTCAAGGAAGGGAAGTTGATGGAGAAAGTTGTTGATCCCATCCTGAAAATTGGAGCTAGTAAGTTGGAGTTGGAGAGTATGAAGGCTTTTGGGTCTCTTGCTGTTGGGTGCTTGGATGATAGGAGGGACAATAGGCCTTCAATGAAAGATGTTGCTAATGAGATTGACTACATTATGGGTATTGTTGCTGATGCTAAGGTTCTGGGGTATTAG 1923 0.4628 MKIIEQHFLLFLITTIILITQSVNVNALRNCEDCGHMKVPFPLSTSPNCGDQNYKIRCNSGTLWFDTINGSSYIITSINPTFQRLVIQPPGLANNTCMSRDFKNEGMWLDTNSPFNITSSNTLILMNCSQEILTMLFNCSSTSICHKYVQEGNPVISKACGPTSRASKLCCDIKTGGSATAHRIRVRDDRCAAYASFPNLDPSLPVSMWRPGVEIEWQLPTEPPCKVAGDCLDLANSGCRGGKCLCNAGFHWDPVNGKCQDTKCQHGSGCKLSKKSPLIGGLILAGTILVAGAMFTAMGYYFQRKRMKREIQKRITSKANLILNSDNNNGRSAKVFTIKEITKATNNFSKSNLLGAGGFGEVFKGVLDDGTVIAIKRAKHGNIRGIDQILNEVKILCQVNHRSLVRLLGCCVELPNEPVLVYEYVSNGTLFEHLHNKNSSKWIRLGWHSRLRIAHQTAEGLAYLHDAAIPKIYHRDIKSSNILLDEKLDAKVSDFGLSKLAATEASHITTCAQGTLGYLDPDYYVNFQLTEKSDVYSFGVVLLELLSSKKAIDFNREEDDVNLVVMVKKAFKEGKLMEKVVDPILKIGASKLELESMKAFGSLAVGCLDDRRDNRPSMKDVANEIDYIMGIVADAKVLGY 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212274g00003 640 SUPERFAMILY Protein kinase-like (PK-like) 331 628 IPR011009 -
Stsc212274g00003 640 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Stsc212274g00003 640 Gene3D Transferase(Phosphotransferase) domain 1 425 630 - -
Stsc212274g00003 640 ProSiteProfiles Protein kinase domain profile. 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212274g00003 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 627 IPR044652 GO:0004672
Stsc212274g00003 640 CDD STKc_IRAK 354 626 - -
Stsc212274g00003 640 Pfam Protein kinase domain 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212274g00003 640 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 320 424 - -
Stsc212274g00003 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Stsc212274g00003 640 FunFam Wall-associated receptor kinase-like 20 425 637 - -
Stsc212274g00003 640 Gene3D Phosphorylase Kinase; domain 1 322 424 - -
Stsc212274g00003 640 SMART serkin_6 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212274g00003 Stsc-Chr212274 12283 18373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212274g00003 31 633 Receptor kinase-like Gene Family AT5G02070 53.215 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc212274g00003 Pkinase 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212274g00003 - - gmx:100775709 878.241