Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212262g00002 ATGGAAGACAAATTCTCTAGCACCAATCAAGATTCCAAAGAAAGAATCTCATCAAGAAGAGCTCATCCAAAGTCCAAAAACAACAATGATGACTGCAAGAAGATTCATGAGAGTAGTGACAAGAACAACAACTACAGCGGAGACGGCGGCGGCAGAGGGAAGCATCATCACCCCACATATAGAGGTGTGAGAATGAGGTCATGGGGGAAATGGGTGTGTGAGATCCGGGAGCCAAGAAAGAAGTCAAGAATATGGCTGGGAACATATTCAACTGCTGAAATGGCGGCAAGAGCGCATGACGTGGCATCATTAGCCATTAAAGGCCCTTCAGCTTATCTCAATTTCCCTGAAATGGCTCAACGTTACCCAAGGCCACTCAGTACATCTCCCAATGATATTCAGGCTGCCGCCGCAATCGCAGCAGTTGACACCGAACAAGAAGATAATAATCAAGGTCTAATAATTATGGAAAGTTCAAATTCAACTGATAATAATAATCGTGGGCAAGAATCTTCAAATAATACTACTACCATGGATGATGATGATGATGATGGCAAATTGTTTGACCTGCTACCAGATCTTTTCTCCGGCGATGGAAAGAGTGGTTCATCGTCCTCTTATTCTCCTTCCTTGAATTTATTTTCAGTTGATTATGGATTCCAGCTTGAGGAGCATTTTTCATCCACTCCATCGTTTCAAGCTCCTACCGCCGTGTGTTCTTCCTTCTCAAAGTTCAGCCGAGTACTTGCATCTATGGAAAAGTTCTCCCCGACGATCATTGCAGAACAGTAG 792 0.4369 MEDKFSSTNQDSKERISSRRAHPKSKNNNDDCKKIHESSDKNNNYSGDGGGRGKHHHPTYRGVRMRSWGKWVCEIREPRKKSRIWLGTYSTAEMAARAHDVASLAIKGPSAYLNFPEMAQRYPRPLSTSPNDIQAAAAIAAVDTEQEDNNQGLIIMESSNSTDNNNRGQESSNNTTTMDDDDDDGKLFDLLPDLFSGDGKSGSSSSYSPSLNLFSVDYGFQLEEHFSSTPSFQAPTAVCSSFSKFSRVLASMEKFSPTIIAEQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212262g00002 263 MobiDBLite consensus disorder prediction 157 175 - -
Stsc212262g00002 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 198 - -
Stsc212262g00002 263 CDD AP2 60 117 IPR001471 GO:0003700|GO:0006355
Stsc212262g00002 263 MobiDBLite consensus disorder prediction 157 183 - -
Stsc212262g00002 263 MobiDBLite consensus disorder prediction 1 41 - -
Stsc212262g00002 263 FunFam Ethylene-responsive transcription factor 2 59 117 - -
Stsc212262g00002 263 SUPERFAMILY DNA-binding domain 59 116 IPR016177 GO:0003677
Stsc212262g00002 263 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Stsc212262g00002 263 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Stsc212262g00002 263 Gene3D AP2/ERF domain 59 118 IPR036955 GO:0003700|GO:0006355
Stsc212262g00002 263 MobiDBLite consensus disorder prediction 1 60 - -
Stsc212262g00002 263 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Stsc212262g00002 263 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Stsc212262g00002 263 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212262g00002 Stsc-Chr212262 14183 15456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212262g00002 53 226 AP2-EREBP Transcription Factor Family AT2G44940 50.000 2.80e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc212262g00002 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212262g00002 - - peu:105131595 184.882