Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212259g00003 ATGGATCTAACGAACCGCTTCTTGCTACTCTTCTTGATGAGCTTCTTGGTTTGTGGTTCTTCGCAGGTTGAAGACGACGTGAAGTGCCTCAAAGGCTTCAAGGACTCTCTCAGTGACCCTCAACAGAGACTCGCCAAGTGGAATTTCGGAAACACTACTTCTGGTTTTGTCTGCAACTTCGATGGTGTCTCATGCTGGAACCCGCAGGAGAATCGTGTTATTGGTCTTGAACTCACTTTAATGAATCTCTCTGGTAAGATTCCGGAGTCAATCAAGTACTGCGGCAAGAGTCTTCAGAAGCTTGTTCTTGGATCCAACTCGCTCTCAGGTTCGATTCCTTCTAAGATCTGTGAGTGGTTGCCGTATTTGGTCACACTTGATCTTTCCGGCAACGATCTTTCTGGAACTATACCGGCTTCGTTAGAGAACTGTTCTTACTTGAACGAGTTGGAACTCTTTGATAACAATCTTTCCGGTCAAATTCCCGGTGAAATCGGGAGCTTGGGGAGGTTGAATAAGTTTTCTGTTGCTAACAATGATCTCACCGGCGCGATCCCCGGGTCGCTTTCGCACTTCGGGAAGGAAGCTTTTGATGGGAACAGTGGGCTGTGTTCCAAATGTGGTGGATTGAGTAAGAAGAATCTTGCGATTATTATCGCTGCCGGAGTGTTTGGTGCCGCCGTGTCGTTGTTGTTGGCTTTTGGGTTGTGGTGGTGGTACCATTTGGGATCGAGTAGGGATAAGAGAGGGTATGGAGTTGGAAGCACTAGCGATGGTGGTGGTGGTGGTGATAATTGGGCATTCAGTTTGAGGGGTCACAAGCTTGTTCAGGTTACTCTGTTTCAGAAGCCACTTGTGAAGGTTAAGTTAGGGGATTTGATGGCTGCAACTAATAATTTTAGTGCCGAGAATGTTCTTATGGCGACGAGGACGGGGACTACTTATAAAGCTGATCTTCGCGACGGCTCCTCGCTAGCGGTGAAGCGGCTTAGTAAGTGTAAGATTGGGGAGAAGCAGTTTAGGATGGAGATGAATAGGTTAGGTCAGGTTAGGCACCCGAATTTGGCTCCCCTTTTGGGTTTCTGTGTGGTGGAAGATGAGAAGCTTTTGGTTTATAAGCACATGTCAAATGGGACTCTGTATAACTTGTTGCATAAGAATGGTGGTGGCGTGTTGGATTGGGAGATGAGGTTCAGGATTGGATTGGGCGCGGCGAGGGGCCTCGCGTGGCTGCACCATGGGTGTCATCCTCCAATTATACAGCAGAACATCTGCTCCAATGTGATTCTTGTTGATGAAGATTTCGATGCACGGATAATGGACTTCGGGCTTGCGAGGCTGTTGACATCTGATACTAATGGGAGTAGTTTTGTTAATGGGGATTTGGGGGAACTCGGCTATGTTGCGCCGGAGTATCCGAGTACAATGGTTGCTTCTTTGAAAGGGGATGTATATGGTTTTGGAATTGTGCTTCTGGAGTTGGTTACGTGCCGAAAACCTCTTGATGTCAACAATGGAGAGGAAGAATTTAAAGGTAGTTTGGTGGATTGGGTGAATAAGCTTTCTAGTTCTGGTAGAGCAAAGGATTGTATTGATAAAGCTATATTTGGAAGGGGACATGACGAGGAGATACTCAAGTTCATGAAAATTGCTTCTAATTGTGTGGTTTCTCACCCTAAGGAGAGGGTGTCTATGTTCCAGGTTTATAACTCCTTGAAGAGTATGGCAAAAGATCACAGTTTTTCAGAATATGATGATGAATTTCCACTGATCTTTGGTAAACCAGGAAATGATGAGGCTTAG 1803 0.4603 MDLTNRFLLLFLMSFLVCGSSQVEDDVKCLKGFKDSLSDPQQRLAKWNFGNTTSGFVCNFDGVSCWNPQENRVIGLELTLMNLSGKIPESIKYCGKSLQKLVLGSNSLSGSIPSKICEWLPYLVTLDLSGNDLSGTIPASLENCSYLNELELFDNNLSGQIPGEIGSLGRLNKFSVANNDLTGAIPGSLSHFGKEAFDGNSGLCSKCGGLSKKNLAIIIAAGVFGAAVSLLLAFGLWWWYHLGSSRDKRGYGVGSTSDGGGGGDNWAFSLRGHKLVQVTLFQKPLVKVKLGDLMAATNNFSAENVLMATRTGTTYKADLRDGSSLAVKRLSKCKIGEKQFRMEMNRLGQVRHPNLAPLLGFCVVEDEKLLVYKHMSNGTLYNLLHKNGGGVLDWEMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEDFDARIMDFGLARLLTSDTNGSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGIVLLELVTCRKPLDVNNGEEEFKGSLVDWVNKLSSSGRAKDCIDKAIFGRGHDEEILKFMKIASNCVVSHPKERVSMFQVYNSLKSMAKDHSFSEYDDEFPLIFGKPGNDEA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212259g00003 600 ProSiteProfiles Protein kinase domain profile. 300 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212259g00003 600 PANTHER LEUCINE RICH REPEAT KINASE 2 72 190 - -
Stsc212259g00003 600 FunFam Leucine-rich repeat receptor-like protein kinase 23 187 - -
Stsc212259g00003 600 Pfam Protein tyrosine and serine/threonine kinase 313 518 IPR001245 GO:0004672|GO:0006468
Stsc212259g00003 600 Gene3D Ribonuclease Inhibitor 23 209 IPR032675 -
Stsc212259g00003 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 375 594 - -
Stsc212259g00003 600 Gene3D Transferase(Phosphotransferase) domain 1 375 591 - -
Stsc212259g00003 600 Gene3D Phosphorylase Kinase; domain 1 262 374 - -
Stsc212259g00003 600 SUPERFAMILY Protein kinase-like (PK-like) 278 572 IPR011009 -
Stsc212259g00003 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 261 374 - -
Stsc212259g00003 600 SUPERFAMILY L domain-like 22 195 - -
Stsc212259g00003 600 Pfam Leucine rich repeat N-terminal domain 24 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212259g00003 Stsc-Chr212259 18482 20284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212259g00003 9 600 Receptor kinase-like Gene Family AT3G28450 64.073 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc212259g00003 PK_Tyr_Ser-Thr 1.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212259g00003 - - gmx:100810378 899.812