Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212257g00005 ATGCCTGAGCTCCGTCCCCGGCAACGCACAACCAACAATAACAAAGAACTGTTAGGCGCTGCCAACCCGAACCCGATTGTTCTCCCGGACCCGCCGGTGGCCGGAGGAGCCAAGCCGAGGAAGAGAACAGCTGCTCCTGCGCCGAACAGGAGGAATCGGAGGCAGAAGAACGCGATCCCCGCGACCGATGAAGTCGGAAAAGTTGTGAACGACGTTGCAATCGAGAAGAACAAGAACAAGAACAACGCCGGTGGTATTAGGGTTTTCAGGGAGGAGGACATGGATGATTACGATAGCGGCGGTAGAAGCGCCGACAAGGCTCCGGGAGCTGAAGAGGAAGGAACCACTGCTCCACTCCCAGAGAAGGTCCAGGTTGGTGGTTCACCGATGTACAGGGTTGATAGAAAACTTGGGAAGGGAGGGTTTGGACAGGTTTATGTTGGTCGTCGCGTTGGAGCCACTAACTACAGTGACAGAACTGGTGCCGGGGCTGTTGAGGTAGCGTTGAAATTTGAACATAGAAGTAGTAAGGGGTGTAATTATGGACCCCCATATGAGTGGCAGGTGTACAATGCATTAGGTGGTAGCCATGGTGTTCCGCGAGTTCATTACAAAGGGCGGCAAGGTGACTACTATGTTATGGTTATGGATATGCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAATTCTCACACGATGTCCACTGAAATGGTAGCATGCATCGCGATTGAGGCTATCTCTATATTGGAAAAGATTCATTCGAGAGGATATGTTCATGGCGATGTAAAGCCTGAGAACTTTTTGCTTGGTCCACCTGGAACATCTAACGAGAAGAAGTTGTTTTTAGTCGATCTTGGATTAGCAACTCGATGGCGTGATACTTCTACTGGACTTCATGTTGATTACGATCAACGTCCCGATGTATTTAGGGGTACAGTTCGATATGCTAGTGTGCATGCTCATCTTGGTAGAACTGGTAGCAGGAGGGATGACTTAGAATCTCTTGCTTACACACTTGTGTTCCTTCTTCGTGGTCGGCTTCCTTGGCAAGGATTTCAGGGAGAGAACAAAGGATTTCTTGTCTGCAAGAAGAAGATGGCCACTTCTCCAGAAACTTTATGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGCTGAATATGTGGTGAATTTGAAGTTTGATGAAGAACCAAATTACGCGAAATACATATCCTTGTTTGATGGAATTGTAGGTCCAAATCCAGCCATCAGGCCAATAAACACTGAGGGTGCACAGAAGCTTATATGTCAAGTTGGACAAAAGAGGGGGCGATTGGCAATGGAAGACGATGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCTGCAACACAGTGGATTAGTGTTTACAATGCTCGCCGACCAATGAAGCAAAGGTATCATTACAATGTTGCTGACTCGCGGCTTGCCCAACACATTGATAAAGGAAATGAGGATGGGTTATATATCAGTTGTGTAGCTTCTTGTTCTAATCTCTGGGCACTTATTATGGATGCTGGCACTGGTTTCAATTCCCAAGTTTATGAACTCTCTCCCTATTTTCTTCACAAGGAATGGATAATGGAACAGTGGGAGAAAAATTATTACATCAGTGCTATAGCTGGAGCTAATAATGGAAGTTCATTGGTTGTAATGTCTAAAGGTAAATTGTATGGGGAATGGAAATTGGCTTGGTTTGCATAA 1731 0.4627 MPELRPRQRTTNNNKELLGAANPNPIVLPDPPVAGGAKPRKRTAAPAPNRRNRRQKNAIPATDEVGKVVNDVAIEKNKNKNNAGGIRVFREEDMDDYDSGGRSADKAPGAEEEGTTAPLPEKVQVGGSPMYRVDRKLGKGGFGQVYVGRRVGATNYSDRTGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKIHSRGYVHGDVKPENFLLGPPGTSNEKKLFLVDLGLATRWRDTSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGFQGENKGFLVCKKKMATSPETLCCFCPQPFRQFAEYVVNLKFDEEPNYAKYISLFDGIVGPNPAIRPINTEGAQKLICQVGQKRGRLAMEDDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADSRLAQHIDKGNEDGLYISCVASCSNLWALIMDAGTGFNSQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGKLYGEWKLAWFA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212257g00005 576 Pfam Protein kinase domain 131 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212257g00005 576 FunFam casein kinase 1-like protein HD16 104 454 - -
Stsc212257g00005 576 MobiDBLite consensus disorder prediction 85 126 - -
Stsc212257g00005 576 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212257g00005 576 PANTHER CASEIN KINASE-RELATED 125 443 - -
Stsc212257g00005 576 MobiDBLite consensus disorder prediction 1 19 - -
Stsc212257g00005 576 MobiDBLite consensus disorder prediction 85 109 - -
Stsc212257g00005 576 ProSitePatterns Protein kinases ATP-binding region signature. 137 170 IPR017441 GO:0005524
Stsc212257g00005 576 SUPERFAMILY Protein kinase-like (PK-like) 131 413 IPR011009 -
Stsc212257g00005 576 CDD STKc_CK1 130 407 - -
Stsc212257g00005 576 MobiDBLite consensus disorder prediction 1 65 - -
Stsc212257g00005 576 Gene3D Transferase(Phosphotransferase) domain 1 101 454 - -
Stsc212257g00005 576 SMART serkin_6 131 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212257g00005 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212257g00005 Stsc-Chr212257 13394 16732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212257g00005 136 407 MAP Kinase Kinase Kinase AT5G50180 23.860 1.08e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Stsc212257g00005 Pkinase 4.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212257g00005 - - gmx:100779382 945.266