Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212238g00003 ATGGCACTGAACGGTGGTGGTTCCTCGAAATGGAAGTACCATGTTTTCTTGAGTTTTAGAGGAGAAGACACCCGCCTAGGTTTCACTGATCACTTACACACAGCCTTGGAGCAGAAAAGAAGTATCGATACTTTCAGAGACAATGAAGAACTTCGGAAGGGTGAATTTATCTCTCAACAGCTCGTTCATGCAATTGAGGATTCTCTCTGCGCAGTTGTTGTGCTTTCCCCAAATTATGCCAACTCAGGGTGGTGTTTGGATGAGCTCCAAAAGATCGTTGAAACGAAGGGAAGTTTGGGGATGCTGGTGCCGGTGTTCTATGACGTAGATCCTTCTGATGTACGACACCAAAAGGGAAAGTTTAAGGAAGCTTTCAGAAAACATGAGGAAAGGTATACACAAGACAAGGTTCAGCAGTGGAGAAAAGCTTTGACATTCGTTGCCAACTTGAGTGGCTGCACCTCTCACAATCGATATGAATCTCAACTCATTGATGAAATTGCTGAAGAAGTAAGGACAAAAGTAGAACTTAAGTTGCCAACAAAGGATGATGATGATCTGGTTGCGATTGATACAAAATTTAAAGAAGTGTGTTCATGTTTAAGCCCAGGGTCCAAAGAAGATGTTCTCTTTCTTGGAATATGGGGCATGGGCGGGATAGGGAAGACAACTCTTGCCTCTATTGTTTCGAAAAGAATCCAAAGAGAGTTTGAAGATGATTGCATTCTCCGAGTTGGAGATGTTTCAAAGGAAGGAGATCTAGTTAACTTACAAAATCGACTTCTTTCACGTCTGAAACTAAGGAGCAGAGTAATTGAAACTTTAGTCCAAGGAAGAGACATCATCAGAAACCTTTTGTACAAAAAAAGGATTCTCATTGTCCTAGATGATGTGAGATCTATAGAACAACTGGAGAATTTGGTTGGAAACAAGGAATGGTTTGGTCCCGGAAGCAGAATAATTGTTACTACTCGGGACAGGAACCTTCTTAGTTCACATGGTGTGTTTAAAATCTACGATATGGAAGTCTTGAATCCTAAAGAATCCCTTCAGCTATTTCATCAAGAAGCATTTAAAGGAGAACATTTACCAGAAGAGTACCTGGAGTTATCTAAGAAGTTTGTGAAGTATACCGCAGGCCTTCCTTTGGCACTCAAGGTGTTAGGATCTAATCTTCGGAGAAGAAGCATTGATGTATGGGAAGATGCTTTAGATGAGATAGGAAAAGATCCAGATGGTGGAATAATGAACATACTGAGAATAAGTTATGATATGTTGAAAGAAGGATACAAGACCATATTTCTTGATATTGCATGCTTCTTTAAAGGGTGGTACAGCGATAAAGTGACAAAAATATTGAAAAACTGTGGCCTTAATCCGACAAGTGGAATAAGTGATCTTATAGGAAAATCCTTGATTACTTGCAACAAAGGAGTTTTAGGGATGCATGATTTGCTTGAGGAAATGGGTAAAAATATAGTTTTTCAAGAATCTAAAAAGGATCCTGGAAAACGCAGTAGGTTGAGCTCTCCAAACGATATTGATCAAGTATTGAAAGAAAATACTGGAACTGAGAACACTGAAGGCATGGTTTTAAAGCAGCAAATTGAATCATATAATAAAGCAACACACTGGCACCCTGAAGCTTTATCTAAGATGAACAACCTTAGACTTCTTGTCATATTATGTGACTTGCACCTTTCGTGTGGTTTCAAATGTCTTCCTAGCTCATTGAAGGTTCTTATTTGGGCAGAATGTCCTTTGAAATCTCTACCACTTGAGACAGAACTACATAAGCTTGTTCACTTGCAGATGAATAATAGCAAACTAGAACATGCTTGGAATGGAAGTCTGGTGTTTGAGGCACTGAAAGTTATGGACTTGAGTTATTCCAAGGATTTGATTCAAACTCCAGATATTTCTAATGTTCCATTACTTGAGGAGCTCTTCTTCGATGGTTGTGTATCGCTTGTTGAACTTCACCAATCTGTAGGTCAGCATAAAAAGCTGACAGTATTGAGCCTGATAGGCTGCATAAAGGTTGAAAAATTGCCAGATAAATTGAAGATGTCTTCATTGAAAAGGCTCTTTCTTTGCGGTTGTTCAAACATAAAGCTACTTCCAGATTTTGGTGAGAGTATGGAAAGTCTGTCAGTGTTGAATTTAATGAAGTGCTCAAATCTTCTTTGCATTCCAGACACCATTGCTAATTTGAAATCACTCAGACTTCTCAACTTGTCCGGATGCTCAAAAATTTGCAAGCTACCACATAACATAAATGAGAACAAGGTTTTAGAGGACCTTGATCTAAGCGAAACTTCCATAAGGGTTGTGAATCGATCCTTGTTTCAAATGGAAAATCTCAAGAGGCTTTCTTTTCATGGATGCAGTGGGCCGGTATCCAACTCCTGCGAGTTAACATCAACTTTTGATGAGTTCAGCATTTTTGAAAAACCAGATCTCAACTGCCTAAATTTGCCTCCTTCTATCTCAGGACTTTCCATGTTAAATAGTTTTGATTTAGGCTATTGCAATCTCCATCATGGATTGATTCCTAAAGATCTAGACAAGTTATCTTCCTTGGAGACACTAATTTTAAGTGGGAATACTGATCTTGTGGTACCTGAGAGTGTATCTAAACTCCCTAACCTACGTTTTCTTGAAGCAGAAGGTTGCATGGGCTTTGTCAATCAATCTGTGCTTCCACATCATTCAGACTCTCTTGTGGAAGCTGGTTTATTCTTAGATCTATGGAAGTTCTGGAAGCAATTCAAGCCAAATAACAGCGAGCTCTTGTGTCAGGTTAGAGATCACAGTTATCCTATCACATACTTCGAAATTCCTCCGAAGTTTGGGAATGAGATACTCTTTCCGATGGGTCCAAGATTGTCAAAACTTGAATCAAGTGCATCAATCATAGTGGACATTCCTAATGAGCGAGGTAGCAATGAGTGGTGGGGAATCATTGTGTTTATTGCCTTTGAGCCTCTGGAATCTTCAACATCATTTCCAAGTCTGAAATTCAATTGGAGCTTTGAATCGTCGCATCCTGAAGCTGGCCCCTCCTTATATCTCTCTTCCAGTGCTGCAAGGGCACATTATAGTTGCTGCCTTGTAACAATGATAATGACAGACAATTACATATATATTCAACTACATCATAGAAAATATGACAACATAAGTGAGTCAAAGGCCTTTAGCAAACATCGTAAGCCAGCTTTTAGTGAGAATAGTAGGCTGCGTTTTGATGTGCAAGGGGGAGAGCTAAAGATGAAGGAATGTAGCTATGATGTATTATGTAAGGAAGATTTTAAATCTAAGGTCTTGCTTAATTCAGAAAATGGGAGTGATGACAATGGATCCAATTCTGGGGAATCAAGCGGTGAGGAATTGGAAAACAGGAGTGATGACAATGGATCTAATAACGGGGAATCAAGCGGTGAAGAATCGGAAAATGGGAGTGATGACAATGGAGCTAATTCCAGGGAATCAATCGGTGAAGAATCAGAGATCAGCAGTGAAGATTCAACAGAAGGAAAAAATGCTCAGTGA 3552 0.395 MALNGGGSSKWKYHVFLSFRGEDTRLGFTDHLHTALEQKRSIDTFRDNEELRKGEFISQQLVHAIEDSLCAVVVLSPNYANSGWCLDELQKIVETKGSLGMLVPVFYDVDPSDVRHQKGKFKEAFRKHEERYTQDKVQQWRKALTFVANLSGCTSHNRYESQLIDEIAEEVRTKVELKLPTKDDDDLVAIDTKFKEVCSCLSPGSKEDVLFLGIWGMGGIGKTTLASIVSKRIQREFEDDCILRVGDVSKEGDLVNLQNRLLSRLKLRSRVIETLVQGRDIIRNLLYKKRILIVLDDVRSIEQLENLVGNKEWFGPGSRIIVTTRDRNLLSSHGVFKIYDMEVLNPKESLQLFHQEAFKGEHLPEEYLELSKKFVKYTAGLPLALKVLGSNLRRRSIDVWEDALDEIGKDPDGGIMNILRISYDMLKEGYKTIFLDIACFFKGWYSDKVTKILKNCGLNPTSGISDLIGKSLITCNKGVLGMHDLLEEMGKNIVFQESKKDPGKRSRLSSPNDIDQVLKENTGTENTEGMVLKQQIESYNKATHWHPEALSKMNNLRLLVILCDLHLSCGFKCLPSSLKVLIWAECPLKSLPLETELHKLVHLQMNNSKLEHAWNGSLVFEALKVMDLSYSKDLIQTPDISNVPLLEELFFDGCVSLVELHQSVGQHKKLTVLSLIGCIKVEKLPDKLKMSSLKRLFLCGCSNIKLLPDFGESMESLSVLNLMKCSNLLCIPDTIANLKSLRLLNLSGCSKICKLPHNINENKVLEDLDLSETSIRVVNRSLFQMENLKRLSFHGCSGPVSNSCELTSTFDEFSIFEKPDLNCLNLPPSISGLSMLNSFDLGYCNLHHGLIPKDLDKLSSLETLILSGNTDLVVPESVSKLPNLRFLEAEGCMGFVNQSVLPHHSDSLVEAGLFLDLWKFWKQFKPNNSELLCQVRDHSYPITYFEIPPKFGNEILFPMGPRLSKLESSASIIVDIPNERGSNEWWGIIVFIAFEPLESSTSFPSLKFNWSFESSHPEAGPSLYLSSSAARAHYSCCLVTMIMTDNYIYIQLHHRKYDNISESKAFSKHRKPAFSENSRLRFDVQGGELKMKECSYDVLCKEDFKSKVLLNSENGSDDNGSNSGESSGEELENRSDDNGSNNGESSGEESENGSDDNGANSRESIGEESEISSEDSTEGKNAQ 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212238g00003 1183 SUPERFAMILY "Winged helix" DNA-binding domain 415 518 IPR036390 -
Stsc212238g00003 1183 Gene3D - 343 427 IPR042197 -
Stsc212238g00003 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 690 IPR044974 GO:0006952
Stsc212238g00003 1183 MobiDBLite consensus disorder prediction 1110 1128 - -
Stsc212238g00003 1183 SUPERFAMILY L domain-like 538 892 - -
Stsc212238g00003 1183 ProSiteProfiles TIR domain profile. 11 175 IPR000157 GO:0007165
Stsc212238g00003 1183 Pfam TIR domain 12 189 IPR000157 GO:0007165
Stsc212238g00003 1183 PRINTS Disease resistance protein signature 378 392 - -
Stsc212238g00003 1183 PRINTS Disease resistance protein signature 736 752 - -
Stsc212238g00003 1183 PRINTS Disease resistance protein signature 285 299 - -
Stsc212238g00003 1183 PRINTS Disease resistance protein signature 211 226 - -
Stsc212238g00003 1183 Gene3D - 6 174 IPR035897 -
Stsc212238g00003 1183 MobiDBLite consensus disorder prediction 1161 1175 - -
Stsc212238g00003 1183 MobiDBLite consensus disorder prediction 1138 1160 - -
Stsc212238g00003 1183 Gene3D - 175 337 IPR027417 -
Stsc212238g00003 1183 Gene3D Ribonuclease Inhibitor 762 896 IPR032675 -
Stsc212238g00003 1183 SMART till_3 12 150 IPR000157 GO:0007165
Stsc212238g00003 1183 MobiDBLite consensus disorder prediction 1110 1183 - -
Stsc212238g00003 1183 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 177 - -
Stsc212238g00003 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 437 IPR027417 -
Stsc212238g00003 1183 Gene3D Ribonuclease Inhibitor 532 688 IPR032675 -
Stsc212238g00003 1183 Gene3D Ribonuclease Inhibitor 689 761 IPR032675 -
Stsc212238g00003 1183 Pfam NB-ARC domain 193 425 IPR002182 GO:0043531
Stsc212238g00003 1183 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212238g00003 Stsc-Chr212238 13424 19446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212238g00003 8 793 WRKY Transcription Factor Family AT4G12020 31.280 1.36e-86 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212238g00003 - - adu:107489070 1458.74