Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212235g00001 ATGGCCACCAATAATGGAGAGCAGAACCAAACTTCTGAAGCTGGAAGGCACCAAGAAGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTCTACCAGTACATCCTGGAGACGAGTGTGTACCCAAGAGAACATGAAGCCATGAAAGAGTTGAGAGAATTGACAGCAAAGCATCCATGGAACATCATGACAACCTCTGCAGATGAAGGACAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATCGGTGTCTACACCGGTTACTCTCTTCTTGCCACTGCTCTTGCTCTTCCCGAAGATGGAAAGATCTTGGCCATGGACATTAACAAGGAGAACTACGAATTGGGTCTGCCAGTTATTAAGAAAGCCGGCGTTGACCACAAAATTACCTTCAAGGAAGGACCTGCTCTCCCTGTTCTTGACGAATTAGTTAAAGACGAGAAGAACCATGGAAGTTACGACTTCATTTTCGTGGACGCAGACAAGGACAACTACCTGAACTACCACAAGAGGCTGATCGATTTGGTGAAGGTTGGGGGTTTGATCGGCTACGACAACACCCTATGGAATGGGTCTGTGGTAGCACCCGCAGATGCACCAATGAGGAAGTACGTTAGGTACTACAGGGATTTCGTGTTGGAGCTTAACAAGGCCTTGGCTGTGGACCCCAGAATTGAGATCTGCATGCTCCCCGTTGGTGATGGAATCACTCTCTGCCGTCGGATCAACTGA 750 0.4787 MATNNGEQNQTSEAGRHQEVGHKSLLQSDALYQYILETSVYPREHEAMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINKENYELGLPVIKKAGVDHKITFKEGPALPVLDELVKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGLIGYDNTLWNGSVVAPADAPMRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITLCRRIN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212235g00001 249 FunFam Caffeoyl-CoA O-methyltransferase 1 17 249 - -
Stsc212235g00001 249 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 24 248 IPR002935 GO:0008171
Stsc212235g00001 249 PANTHER O-METHYLTRANSFERASE-RELATED 22 248 - -
Stsc212235g00001 249 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 28 247 IPR029063 -
Stsc212235g00001 249 Pfam O-methyltransferase 37 248 IPR002935 GO:0008171
Stsc212235g00001 249 Gene3D Vaccinia Virus protein VP39 23 249 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212235g00001 Stsc-Chr212235 4936 7358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212235g00001 5 249 Monolignol Biosynthesis Gene Families AT4G34050 87.755 1.75e-166 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212235g00001 K00588 - gmx:100811247 470.7