Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212228g00002 ATGGAGTCTAAAGTTGAGATTTTATCTAAGGAAATGGTAAAGCCATCGTCTCCAACCCCAACTCACCTCAGAGACTTCAAAATCTCACTCCTTGATGAAATGGTTCCTCCAACCTACGTTCCAATTATTTTGTTCTACTGTGCCGGCACTGATGGAGCTCAAGATTTCGAAGTGATATCCAACAAGTTAAAGTTTTCATTATCCAAAATCCTCAATCTTTACTACCCATTTTGTGGAAGATTGAAAGCCACGTCATCATCCTCCGTTGATTGCAATGATGAAGGTGTACTTTACATTGAGTCTAAGATCCCTACAAACCTTTCAGATACTCTTAAATTGTCTCAGTCTCAAATAAAAGAGCTTCTTTTGCCATTTGACCCATATGATGTTCCTAGTACAATGGATAATTATGACAGAAGCATGGTGAACATGGCGGTTCAATTAAGTGAATTCAGATGTGGGGGTATTGCACTTGGTGTGTGCCTCGCACACAAGTTAGCAGATGCTGCAGCTACCGCATCGTTCCTCAATTCTTGGGCCGAAGCTACAAGGGATATTGATAATGGGGGAAATGGCAGCATTGTAGAACCACCTCGAATGGATGCATCGTTGATTTTCCCGCCAAGGGGAATAGAATTGGCCATAAATGAGCTCATGGTTGTTGGTGGTAGTGGTGGTGGTGCCCATGATGAAAAGCTGGTGACCAAGTGCTTCTTGTTTAACGCTACTAACTTATCCAGTTTGAAAGCTAGATTTGGTGACTTCAACGCCACTGGTGTTGAAGCTATCACAGCACTCATATGGAGATCAGCTATACAGGCGGCAAAAGCAGCAACAGCTGGTGGTGGTGAGTCCAAGACAACCCTCAAACCTTCCCTCGTGTGCCATGCAGTGGACATTCGCAATAGAATGGTGCCATCATTACCAAAAACATTATTTGGAAATCTTTGCTTATATTCTTTTACTGACTTAGTGGAATCGGATGGAATCTATGGATCGGAAGAATTGGATGATTTGGTGGAGATAGTTAGGAATGGAATTAAAGAAGCCATTGCAAACTATTCGGGTTTGCTTCAAGGGGATGGCAGTTTAGATGAGCTTGTTGAATTCTTCAAAGAAGCTAGATCAATGTTTGCTGACAACTTTGTTACATGTTATGGATTTACAAGTTGGACAAGATTTGGTTTTTATGAAGTTGATTTTGGATGGGGGAAGCCAAGTAAAGTGAGACATATCAGTCATCCATTGAAAAATGTTGTGTATTTAATGCCAACAAGAACTGGGGATGAAATTGAGGCATGGATAAGCATGACTGAGCATGAGATGGTCCAATTCCAACGTAACCCAGAGCTTCTCCAATATGCTTCCTTGGAATTTTAG 1380 0.4152 MESKVEILSKEMVKPSSPTPTHLRDFKISLLDEMVPPTYVPIILFYCAGTDGAQDFEVISNKLKFSLSKILNLYYPFCGRLKATSSSSVDCNDEGVLYIESKIPTNLSDTLKLSQSQIKELLLPFDPYDVPSTMDNYDRSMVNMAVQLSEFRCGGIALGVCLAHKLADAAATASFLNSWAEATRDIDNGGNGSIVEPPRMDASLIFPPRGIELAINELMVVGGSGGGAHDEKLVTKCFLFNATNLSSLKARFGDFNATGVEAITALIWRSAIQAAKAATAGGGESKTTLKPSLVCHAVDIRNRMVPSLPKTLFGNLCLYSFTDLVESDGIYGSEELDDLVEIVRNGIKEAIANYSGLLQGDGSLDELVEFFKEARSMFADNFVTCYGFTSWTRFGFYEVDFGWGKPSKVRHISHPLKNVVYLMPTRTGDEIEAWISMTEHEMVQFQRNPELLQYASLEF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212228g00002 459 Pfam Transferase family 4 451 - -
Stsc212228g00002 459 Gene3D - 1 213 IPR023213 -
Stsc212228g00002 459 PANTHER F21J9.9 6 456 - -
Stsc212228g00002 459 Gene3D - 230 453 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212228g00002 Stsc-Chr212228 3780 7332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212228g00002 4 447 Monolignol Biosynthesis Gene Families AT5G48930 25.647 1.07e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212228g00002 - K13065 gmx:100792323 385.956