Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212228g00001 GGTAGAGTCATTGATGATCACATTCATGAAGTCAAAGAAATGAATTTTGAGAACTCCCTCAAACTTTTCAGCTTGAATGCCTTCAACAAGCTTCATCCTCCAGAAGATGAATATTGGGATCTATCAATGAAAGCAGTTGTATATGCAAGTGGCATTCCTTTAGCTTTGAAAGTCTTGGGATCTTTCTTGCGATCGAAAACTTACAATGAATGGGAGAGTGCATTGGCAAAACTGAAAGCAATTCCCAAAGGAGATATTCAGCAGGAAATGGGTCACAAAATTGTTGATGAAGAATCCATTAAGAACCCAGGAGGACGAAATAGGTTGTGGAAATCTGAAGAAATTCAAGACATATTGAAAAATGACAAAGGAACAGATGCAATTGAAACAATATTCTTGGATATGACAGAAGACACGGACCTTTGTATAAGTTCCGAGGCATTTAGGAAGATGCCAAACCTAAGGTTACTTGCTTTTGCAGATAATAAAGCTTCTCAGAGGAAAAAGAAGAAGAGAACTAATGAGACATTGTCCTTTCCAACAGATCTTGAACTGCCTAATAACTTGAGATATATTCAATGGGATGGATGTCCATTAAAATCTCTAACAACTAGTTGTTGGCCTACTAAGCTAGTTGAGCTTTCTATGCCATACAGCAATGTTGAAAAACTTTGGGATGGAGAACAGAGCCTACCAAGTCTAGAGATAATCAACCTTGAATGTTCAAGACGCATGATAGAGTGTCCGAACTTGTCAGGTTCCCCAAATCTGAAACTAGTAAAGCTCACTGGGTGTGAAAGCTTGACTCATGTTCACCCTTCCGTTTTCTATCTTCCAAAGCTTGAAAGTTTATTTGTATATGAATGCAAAGCACTTAAAAGCCTATCAAGTGAATATTGTTCACCTTCTCTTCAAGCAATTGTCGCTTATAATTGTCCTAATCTCCAAGAGTTCTCAGTCCCAATCTTAGGTGATCATTCTGGATTCCATCTGCATCTGAGGTCAACTGCTTTGAAAACCTTGCCTTCATCAATTTTTCATCTTAAAGATCTTAGAGGTTTCTCCTTTCCAATTAGTGAGAGCCTTATGGATCTTCCTATAAATTTTGCCTTTCAAATCACGCTTTCTGACCCTATTGAGCATAAATATGACACTTCAAGCACCTTTCATAGAGTACTACCTAGCCCTGTTTTTCAATCTGTAGTTCGTCTAGTCTTAGATAATTGTCGAAGCTTAACCGAAATCCCAGATAGCATCTCTTTGTTATCATCATTACAGCACTTGAATGTTTATAGCTGCACTAATGTCATAACCTTGTCAGAAAGCCTTAAGTGCCTTCCACGGCTTGAAGTTCTTAACATTTTTCAATGTCACATGCTACAACTTATACCGGTTCTTCCACCTTCCCTTAAACGCCTTAGGGTCTGGGATTGTGATCTTCTAAAGACAGTGTTGAGTACAATAAGTGAACCACCCAGAAAAGATGAGGCTACATTTTTGTTCCTCAACTGCAATAATTTGGATGAGGACTCGTGTAGTATCATCTTGAAAGATGCTATTCTTAGGACAGAACTTGGGGTAAAAGAAACAGAATTTGAAAACCAAGAAGAAGAAGAAGAACTCCCTGAGGTTGATCGTGATTGCTTTGCATATTTTAGTGAGATTTGTTATTTGTTGCCAGTTAGAGGCAGTAATATTCATGACTTGTTTGATGTCCACTCTGTTGAAGCTCATTCTTTGACTGTTGAACTTCCTCAAGATTCTAATCTAGTTGGTTTCCTTTTCTTCATTGTTCTTTCCGAAGAAGAATGGAGTGACATAGAAGAACAAACATGGTACGATGTAATTGACTTCCTAGGATTCGGGTGTGAATGTAACTTGGAAACAAGTTGGGGTGAAAAGGTTCATGCAGAAAGCTTGTCCTTGTTACAATGGCACTGGGATCAACTCTACCATCATGTTGATATTAAGTCAGATCATGCATTGTTATGGTACGATGAGAAATGTTGCAAGAAGATAATGGAACCAATTAGAGGGACAGAAGGAAAAGGCATCAATGAAGAGAAGGGGTCCACTGGCAATAATAATGCAAATCTTACTCTTGAATTCTTTGCTGGAGTATTGAATAAATTGGATGCAGTGATACAAGAGTGTGGCATTCACTGGATATATCAAAATGTGGAAGAAGAAGAAGAAGGATCAAGAGGCCGCAAATCCAAGAGAACAAACAAAGAAGCCGATGAGGAAGATGGTTCTGAATCTAATGAGCAAGAAGAATCAATTCCTCCAAACAAAAAGCTAAAGCAAAGTTTGCTAGAACCTCCCTTGATCCTTGAAGGAGAAGAAGTAGTAGAGGACATGAGGTAA 2367 0.384 GRVIDDHIHEVKEMNFENSLKLFSLNAFNKLHPPEDEYWDLSMKAVVYASGIPLALKVLGSFLRSKTYNEWESALAKLKAIPKGDIQQEMGHKIVDEESIKNPGGRNRLWKSEEIQDILKNDKGTDAIETIFLDMTEDTDLCISSEAFRKMPNLRLLAFADNKASQRKKKKRTNETLSFPTDLELPNNLRYIQWDGCPLKSLTTSCWPTKLVELSMPYSNVEKLWDGEQSLPSLEIINLECSRRMIECPNLSGSPNLKLVKLTGCESLTHVHPSVFYLPKLESLFVYECKALKSLSSEYCSPSLQAIVAYNCPNLQEFSVPILGDHSGFHLHLRSTALKTLPSSIFHLKDLRGFSFPISESLMDLPINFAFQITLSDPIEHKYDTSSTFHRVLPSPVFQSVVRLVLDNCRSLTEIPDSISLLSSLQHLNVYSCTNVITLSESLKCLPRLEVLNIFQCHMLQLIPVLPPSLKRLRVWDCDLLKTVLSTISEPPRKDEATFLFLNCNNLDEDSCSIILKDAILRTELGVKETEFENQEEEEELPEVDRDCFAYFSEICYLLPVRGSNIHDLFDVHSVEAHSLTVELPQDSNLVGFLFFIVLSEEEWSDIEEQTWYDVIDFLGFGCECNLETSWGEKVHAESLSLLQWHWDQLYHHVDIKSDHALLWYDEKCCKKIMEPIRGTEGKGINEEKGSTGNNNANLTLEFFAGVLNKLDAVIQECGIHWIYQNVEEEEEGSRGRKSKRTNKEADEEDGSESNEQEESIPPNKKLKQSLLEPPLILEGEEVVEDMR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212228g00001 788 MobiDBLite consensus disorder prediction 731 788 - -
Stsc212228g00001 788 SUPERFAMILY L domain-like 131 509 - -
Stsc212228g00001 788 Pfam Leucine Rich Repeat 210 229 IPR011713 -
Stsc212228g00001 788 Gene3D - 14 94 IPR042197 -
Stsc212228g00001 788 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 81 IPR044974 GO:0006952
Stsc212228g00001 788 MobiDBLite consensus disorder prediction 731 748 - -
Stsc212228g00001 788 Pfam NB-ARC domain 6 84 IPR002182 GO:0043531
Stsc212228g00001 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 88 IPR027417 -
Stsc212228g00001 788 Coils Coil 527 547 - -
Stsc212228g00001 788 Gene3D Ribonuclease Inhibitor 103 323 IPR032675 -
Stsc212228g00001 788 Gene3D Ribonuclease Inhibitor 329 514 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212228g00001 Stsc-Chr212228 38 2887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212228g00001 88 428 WRKY Transcription Factor Family AT4G12020 33.708 3.30e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212228g00001 - - ahf:112777818 1260.74