Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212222g00005 ATGGACTCCATAAATCTGAGCTACGAGCAGAAGCTTCAAGTTGTGGCACGAATCGTTGATGAAGACGACGCACGCGTTAACGACGCGCCCCCCAGTGAGGTACAACTCGGCCTTACGGCGACCCTCAAACCACACCAGGTTGAAGGGGTTTCATGGCTTATACGGAGGTATAAAATCGGTGTCAACGTTGTTCTCGGGGATGAGATGGGACTAGGCAAGACTTTACAGGCTATTGCTTTCCTAAGCTATCTGAAAGTGTACCAGTTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTATCAGAGATAGTGAAATTTGCCCCAAAACTAGATGTCTTTAAATATGTTGGTGATAAAGAATCCAGGCGCAATCTGCGTATGAAAATACACGAACATGTAAAAGGGCAGGCATCAACAGATGTATTATTGCCATTTGATGTCCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCTTAACTCAAATACCATGGCATTATGCAATTATTGACGAGGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACGCCTATTCAGAATAATCTCTCTGAGTTGTGGTCACTGATGTATTTCTGTATGCCAGCTGTCTTTGGTACGCCGGATCAGTTCCTTTCCACGTTCAAGGATATCAATGACCTTACATCAGATGTTCATAATCCATGGGTAAAAGAGCGACTTAAAATTTTGAAAAGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGAGTTGCCACCTCTCACTGAGACAACCATGTTGGTACCCCTTACTATCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTACAGAATATTTTGGCTATGCTCAATTATACATGTTACATGGAGTCTTCTAGTTGGTTGAAGAACAAAGTCCTTGGGCAATGA 1077 0.4169 MDSINLSYEQKLQVVARIVDEDDARVNDAPPSEVQLGLTATLKPHQVEGVSWLIRRYKIGVNVVLGDEMGLGKTLQAIAFLSYLKVYQLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKESRRNLRMKIHEHVKGQASTDVLLPFDVLLTTYEIAMMDQDFLTQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMYFCMPAVFGTPDQFLSTFKDINDLTSDVHNPWVKERLKILKRLLGAFMLRRTKSKLVESGNLELPPLTETTMLVPLTILQKKVYMSILRKELPKLLALCSGASNHQSLQNILAMLNYTCYMESSSWLKNKVLGQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212222g00005 358 Gene3D - 14 289 IPR038718 -
Stsc212222g00005 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 275 IPR027417 -
Stsc212222g00005 358 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 230 IPR014001 -
Stsc212222g00005 358 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 21 341 IPR031053 GO:0003678|GO:0006281|GO:0006338
Stsc212222g00005 358 Pfam SNF2-related domain 59 343 IPR000330 GO:0005524|GO:0140658
Stsc212222g00005 358 SMART ultradead3 38 245 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212222g00005 Stsc-Chr212222 20215 25921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212222g00005 5 339 RAD5 or RAD16-like Gene Family AT1G11100 24.619 1.13e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc212222g00005 SNF2_N 7.4e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212222g00005 K20092 - gmx:100797182 525.013