Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212222g00003 ATGGAAGATGGTGAACATCTTGTTCAGGCGTGTGGCAAGCTTCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTGTGGACACCGCATTCTTCTTTTTGCGCAGATGACCCATACACTTGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTATGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCGGCTCATCAGCTAATATGGGCTTAAATTCTGATCCTGAGCATCATGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGTGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAGCCTTGTCACAGAACATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTGCGGCTAAGTTTCAATGTCATAGGTGAAAATGTTGTGGAAAATGAAGATAATGAAGCATCTGGAGTAGGAACTACTGATTTGAAATCCATCATATTTGGGTTACGTATGTTTGACGCCACTGAGATGAATGATGGAAAACACGTGGATATAGGCATGCAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAATCATTTGACAAGGATGACAGGAAACTTGAGGTCAATGCGAGAAACCTCTTGAAAGGAAATGAAGTTACAGGAGTTTCTGATTTGCTATCTTGTGATCTTGGTTTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATATGATGTTGGATTCAAGGAGCAGGAGGAGTTCAGATGAGGAAAAGAGTTCAAAAATTGAGTCTGCGAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCATTGACTGTCCAAGACCCTATCTGTCCACCAAATGCTGATATTGTATCAGTTACAGGATCTGTTCATTTTTTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCCATCTGAACCTGCTATGATATTCAGTTGCGTTGATACCTCTGGACACTGGGGTCGCGGTGGAATGTTTGATTCCCTTACCAGACTTTCTACAAGTATTGGTGATGCATATGAACGGGCTTCTGAAAATGAAGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAATGTGGACAGAAATGCTATCAAATGGGTTGCTTTAGCTGTGGTGCAGTCATACAATCCAAGGCGTAAAGTTCCCCGTAGTGATATCTCACTTCCCCACTTGGAGAACTGCTTAGGAAAGGCAGCGTTCTCAGCTGCTCAAAATTCTGCGTCAATCCACATGCCACGCATTGGTTATCAAGATGGTTCTGAGCGATCAGAGTGGTACACCATTGAGCGTCTACTAAGAAAATATGCCTCGATTTACAACATAAATATATATGTATACTATTATCGAAGATCGCGTTAA 1575 0.4121 MEDGEHLVQACGKLLILDQLLQKLYSCGHRILLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSGSSANMGLNSDPEHHGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCISLVTEHTVEEVIMRRAEKKLRLSFNVIGENVVENEDNEASGVGTTDLKSIIFGLRMFDATEMNDGKHVDIGMQELNAMAEKVIAMRDEQSFDKDDRKLEVNARNLLKGNEVTGVSDLLSCDLGFDEASYLSWVKNFEEVSKTSCDMMLDSRSRRSSDEEKSSKIESAKKKAEEKKLSKWKSVGYHSLTVQDPICPPNADIVSVTGSVHFLHGDCTAPSNVSPSEPAMIFSCVDTSGHWGRGGMFDSLTRLSTSIGDAYERASENEDLHLGDLHLIKLEDGHDEQNVDRNAIKWVALAVVQSYNPRRKVPRSDISLPHLENCLGKAAFSAAQNSASIHMPRIGYQDGSERSEWYTIERLLRKYASIYNINIYVYYYRRSR 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212222g00003 524 CDD SF2_C_SNF 5 148 - -
Stsc212222g00003 524 CDD Macro_Poa1p-like_SNF2 351 509 - -
Stsc212222g00003 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 184 IPR027417 -
Stsc212222g00003 524 Gene3D Leucine Aminopeptidase, subunit E, domain 1 351 524 IPR043472 -
Stsc212222g00003 524 MobiDBLite consensus disorder prediction 294 314 - -
Stsc212222g00003 524 SMART helicmild6 42 137 IPR001650 -
Stsc212222g00003 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 19 184 IPR001650 -
Stsc212222g00003 524 Gene3D - 1 247 IPR027417 -
Stsc212222g00003 524 Pfam Helicase conserved C-terminal domain 13 137 IPR001650 -
Stsc212222g00003 524 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 2 246 IPR031053 GO:0003678|GO:0006281|GO:0006338
Stsc212222g00003 524 SUPERFAMILY Macro domain-like 352 519 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212222g00003 Stsc-Chr212222 12239 20058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212222g00003 13 167 RAD5 or RAD16-like Gene Family AT5G22750 34.839 1.74e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212222g00003 K20092 - gmx:100797182 716.842