Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212220g00001 ATGCTTGATAACCTTGAGAAAGAGCTTCAACAACAACTCAAGGACACACTGGAGCAAGAGGAGAGACTTTGGCTCCAAAAATCTAGGGCCCAATCTTCACCAGGTGGATCTTTTGGGAGACTTCCTTCTAATGAGAAAATTCATAATGCTTTCTTCAATATTGGAGCGCTTAAGGCTAAGGGATGGATTGCAAGGCATGCTCTACCATCAAAATTGGGGGATAATCCTGAAGAAGTTGAAAATGCAGGGGATAGGTTGCACGCTGTCCTTCCTCGCCCATTGCTAACAAGTTGGGGCCGCGTGCTTTCTGAGTTTAAGATGTTCAACATGAGGAGATTTATTGTGGTGGATAGTGTGTTGAAGTCAAGGACCACCGAAACAAATCTTGTGCTGACCTTCTCTAACAGAACCGTGGTTACGCCTGTCGCTAACCCATCGTTCCCACTGGAGGCGCTGAGGCTTAGGGCCATCAGTGACATTCTAACTGCTGAGAGAATCAACGAAGCTGAGACGTTTGATGTTGTGGCTCTGGTTGTTGGCAAGGGTGACCCAAGGGAGATGCAGAGCAAGACTGGGAAAGATCTAAAAAGGCTGCTTATTGTGGTGGAAGACCTGGAGATCAATTGTTCTCTGTTTGACAACCATGTGGATGCAATCGTTCCACACCTTAACGAGGCACGGAATGAGCCACTTATAGTGGTCCTTCACTACTTTAAGGCAACGCGTTGGAATGGAAGGACCTCGCTGCAGAGCGCCTTCGATCTGTCAAAAGTTCGCATCAATCCTGACCTGAGTAAGGTTGTAGCCTTTAAAGAAAGGCTGGGTGGCTACGGAGCTTCCTCTACAATTACCCATGTTTCCTCCCAAAGTGGACCTTCCGGTGCAGAAGAGTTGACACAAGGGAATGTCAACGTCATGAAGATAGAAGATGTTGTGAAAATTGGCAAGGAGGGCCACGCTTGGGTTGTCGCTCGTGTTGCTGGCCTTAATGTTGGCCCCACTGATTGGTGTTACAAGGGCTGTGGGACGTGTGGCAAGAAGGTGGATGTAGCCCCAAAGGGGAGATACGAGTGTAGTCAATGCCATCACACCGGTGAAGATTTCAAATTCAAGTATAAGGTTGAGGTCTTGGTGTATGACCTCACCGCATGCATAACTTTGCTGCTTTGGGACGGTTCCGTAATCCCGCTCTGTGGGAAGAGTGCAGATGATGTTGTCAAAGAGGACACTGAGGAACTGGGTTATCCTCCGACTTTGGATAAAAAAATGGGTCAAGTAATGTAA 1284 0.4766 MLDNLEKELQQQLKDTLEQEERLWLQKSRAQSSPGGSFGRLPSNEKIHNAFFNIGALKAKGWIARHALPSKLGDNPEEVENAGDRLHAVLPRPLLTSWGRVLSEFKMFNMRRFIVVDSVLKSRTTETNLVLTFSNRTVVTPVANPSFPLEALRLRAISDILTAERINEAETFDVVALVVGKGDPREMQSKTGKDLKRLLIVVEDLEINCSLFDNHVDAIVPHLNEARNEPLIVVLHYFKATRWNGRTSLQSAFDLSKVRINPDLSKVVAFKERLGGYGASSTITHVSSQSGPSGAEELTQGNVNVMKIEDVVKIGKEGHAWVVARVAGLNVGPTDWCYKGCGTCGKKVDVAPKGRYECSQCHHTGEDFKFKYKVEVLVYDLTACITLLLWDGSVIPLCGKSADDVVKEDTEELGYPPTLDKKMGQVM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212220g00001 427 Pfam Replication factor-A C terminal domain 335 410 IPR013955 -
Stsc212220g00001 427 SUPERFAMILY Nucleic acid-binding proteins 304 411 IPR012340 -
Stsc212220g00001 427 SUPERFAMILY Nucleic acid-binding proteins 156 275 IPR012340 -
Stsc212220g00001 427 CDD RPA1_DBD_B_like 173 274 - -
Stsc212220g00001 427 Gene3D - 146 284 IPR012340 -
Stsc212220g00001 427 Gene3D - 285 427 IPR012340 -
Stsc212220g00001 427 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212220g00001 Stsc-Chr212220 16342 19608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212220g00001 111 412 Core DNA Replication Machinery Family AT5G08020 23.003 3.90e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212220g00001 - - aip:107635329 304.293