Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212213g00001 ATGTCTAGAAATGACATTTTCTATGATTCTACCGTCTTATTAGTGGATCCACCACCTACACCACCATCTAATGAAGAGCCATCCCATAAAAAATCTGATACAACTTTGTTCTTCCTTGGAGGGATAGTGCTGTTCATCATATTGTTGATAATTTTGCTTGTTTTTTGGAAGCGTATCAAAGGGACCAAAAATACTAAACCTCCTAAAACTATTAAAGCCAAACAAGGGAGACTTACTGAAAAAGCAGAAGTTATGGAGATGATATTTTCATCTAAACAACAGCAAGGATCCACGGAGTTCTTGAGTGGGAACCTTAGGACAATTAGTTATTTTGACTTCCAGACATTAAGAAGAGCAACCAAGAACTTTTCACCTACTAATCTTCTTGGAAGCGGTGGATTTGGTCCTGTCTATCGGGGGAAGTTGATGGATGGAAGAGTAATTGCTCTTAAGAAATTATCTTTGAACAATTCCCAGCAGGGAGAAAGAGAATTTCTGTCAGAGGTGAGATTGATCACAAGTATTCAACACAAAAATCTGGTTCGCCTTCTCGGATGCTGCATAGATGGACCCCAAAGGATACTTGTCTATGAATACATGAAAAACAGAAGTTTGGACCTCTTCATATACGGGAACAATGGTGATCAGTTCCTGAACTGGAGCACTAGATTCCAAATCATTCTAGGCGTGGCAAGGGGATTGCAGTACCTTCATGAGGATTCGCATCTAAGAATTGTTCATCGAGATATCAAAGCAAGTAATATTCTTCTTGATGACAAGTTTCATCCCAAGATTGGAGACTTTGGTCTTGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACACAATTTGCTGGAACATTGGGTTATACGGCTCCGGAATATGCTATTCGAGGAGAACTATCAGAGAAGGCCGACATCTATAGTTTCGGAGTTCTATTGCTCGAAATCATTTGCTGCAGAAAAAACACAGATCTTACTTTGCCATCCGGAATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAATTCAAAAACTATGGAGCTTGTGGATCCAAAGCTGAAAGAAGATGGGTTGGTGGAGAAAGATGTTATGCAAGCATTCCACGTGGCATTCCTATGCCTTCAGCCTCTTGCAAATCTAAGACCTCCAATGTCAGAGATCGTGGCACTGTTGACATTCAAAATTGACATGGTCACAACGCCAATGAGGCCAGCATTTCTTGATCGAAAGCGCAAAAGCGATGTTCGAACTACCCCTTCTCCAGATGTAATATCTCATGCTTTCACATCTCCCATGAGTAGTAGTTTTATGTAG 1326 0.408 MSRNDIFYDSTVLLVDPPPTPPSNEEPSHKKSDTTLFFLGGIVLFIILLIILLVFWKRIKGTKNTKPPKTIKAKQGRLTEKAEVMEMIFSSKQQQGSTEFLSGNLRTISYFDFQTLRRATKNFSPTNLLGSGGFGPVYRGKLMDGRVIALKKLSLNNSQQGEREFLSEVRLITSIQHKNLVRLLGCCIDGPQRILVYEYMKNRSLDLFIYGNNGDQFLNWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDDKFHPKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDLTLPSGMQYLPEYAWKLYENSKTMELVDPKLKEDGLVEKDVMQAFHVAFLCLQPLANLRPPMSEIVALLTFKIDMVTTPMRPAFLDRKRKSDVRTTPSPDVISHAFTSPMSSSFM 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212213g00001 441 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 43 425 - -
Stsc212213g00001 441 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 200 405 - -
Stsc212213g00001 441 CDD STKc_IRAK 129 396 - -
Stsc212213g00001 441 Pfam Protein tyrosine and serine/threonine kinase 127 393 IPR001245 GO:0004672|GO:0006468
Stsc212213g00001 441 ProSiteProfiles Protein kinase domain profile. 123 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212213g00001 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Stsc212213g00001 441 Gene3D Transferase(Phosphotransferase) domain 1 200 404 - -
Stsc212213g00001 441 FunFam Cysteine-rich receptor-like protein kinase 10 87 199 - -
Stsc212213g00001 441 SMART serkin_6 123 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212213g00001 441 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Stsc212213g00001 441 Gene3D Phosphorylase Kinase; domain 1 81 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212213g00001 Stsc-Chr212213 4514 7725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212213g00001 111 411 Receptor kinase-like Gene Family AT1G56120 48.505 3.34e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc212213g00001 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212213g00001 - - aip:107633022 675.241