Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212206g00002 ATGGCTGAAATTGTCATCTCCATAGCTGCCAAGATCTCAGAATATGTGGTGGATTTAGCGATTCGTCAAGGACAGTATCTGTTTCGTGTCGGAAGATTCATTAAGAATCTTGAAAAAGAGAAGCAGAAGCTGCTTTCAACACTAGACGGTGTGCAGGAAAGAGTTGAAGCAACTGACAAAACAGAACAAGTCAAAGAATCTGTTCTGAACTGGATCAATGAAGCCGAAAAGCTTGTAAAAGAGGTGGAGAATCTTGAAACAGAAATAGAGACTAATGGAAGTTGTTTCAAGGGACAATGTTCTATTGGGAAGAGATATAATCTGTGCAAGAAAATTCAACAGAAAATAGAGTCTCTGATAAATCTGAACAAAAATGGTCAATTTGAGACTATTTCCTTTCCTGCTCCAATTCCAGGCAGTGAGTATTTATATCCTGGAAACATTGTTTACTTCAAGTCCACGCAAAACGCTTCGGATCAAATTTTGGAGGCGTTGCGAGATGATAGTATCAATTTGATTGGACTCTATGGAATGGGAGGTTCTGGTAAGACAATATTGGTAAAAGCAGTTGGTAACAAGGCCAAGGCTATGAATCTTTTTGACCGAGTTGTGCTTGCCACTGTTAAAGAGAGAATTCTTGTGATCTTGGATGATGTCTGGGCTAAGCTTAAGCTTGAAGATATTGGGATTCCTTGTGATGTGGGCAACCAAAGCAGCTGCAAGGTCCTTTTGACCACGCGTCTGCGCGGAGTTTGTACTTTAATGAACTGTCAAAGAGAGGTTCCTTTAGATCTCTTGTCTGAAGAGGAAGCTTGGATGTTTTTCGAAGAACATGCAGGAATAGGTGACTATTCGCCATCCGAGCTGTTAAAGGTAGCATCAAATGTTGCTTTGGAATGTAAAGGGTTACCAATCGCGATCGAAGCAGTAGGATCTTCCTTGAAAAGGAAGCCTATTGAGGCGTGGAAAGCAGCATTATACAGTCTGAAACATTCAAAGCCAATGGATGTTGAAGATGGAGTGAGAGATGCTTTCTCCTGCATTGAATTAAGCTACAACCATTTGAGAAGCAAAAGAGATGAGTTGATGTTCTTGATGTGCAGTTTGTTTCCAGAAGATCATGAGATCTTTGTTGAGGATTTGATCAGATGTGGAGTGGGATTAGGAATATGCGGCAAAGTTGAATCGATTGACATGGCAAGGAATCAGTTGAGAGCTAGTATTAACAAACTTCTAGACTCTTGTCTGCTGATGCACTCTGACAAAAATACAGATCATGTGAAGATGCATGACATGGTTCGCGACACTGCTTTGTGGATAGCATCAAGATCAGCGAACGAAAAGATCCTGGTAAATCTTGATAAAGATCTAAACACCTTGGTTGAAAATGGAGACATCAATGATTCTTTTGCAGTATCATCATGGAACAAGAAAACGAACCGGATTGCTGCTCAAGTCACTGCTCCAAAGCTTGAGTTTCTGTTGCTGAGTACTAGAATGTCCTTGGATATGACAAGTTCATCTTTTGAATGCCTTAAAGAGATCAAGGTTATGGCAATTATCAGTGAAGGTTATAGGACTTTACTATCATTGCCAGATTCAACTCAATCCTTGACTAACCTGCAAACTCTATGCTTGAGAGGATGGGATTTAGGTGATATATCTTTCATACAAAATCTTAGAAAGCTTGAGGTTCTTGATTTGCGAGCATGTCGCTTCAAACAAGTTCCGAAGGAAATAGAGAAACTGAGTAAACTGAAGTTGCTGGATTTGTCAGGCTGTGAAGTTCTAGAAAGCTATAATTCTGAAGCAATTGGAAATTGTGAACAGCTTGAAGAGTTCTATGTTTCTGGACCTTCCTTCCAAAGGGATGATAAATTCATATTTCCATGTCAAACCTTTCTGGATGATGTTACATCTCCGAATCTGCAGAGGTATGTATTAGAGCTTGGACCTTTACAAACTTATGGCCATGGCATCAACGAGAATTCGAGTGTGAGAGCTCTAAGCTTGAAAGAGTTTGATATATCCAAATTTGGTGCATCTAAGATGAATCTTCTGCAAAGAGCAGAGGATATTTATTTGAACCGGCTTCGCGGAAGATGTAAGAATATTGCTCCAGAGTTGGTTCAAGCTGCAGGAAGCATGAATGATTTGACTAAGCTCCGGCTTCGCGCTTGTTCAGAGATAGAATGCATAATAGATACAGCTTCTGCTGGCAGTTATTTTCAGTTAGATGCTTTGATCCCGGAAGAACTCTACATAAGGAAGTGTGAGCAGCTGCATAACATTTTCCCTGAGAACTGCGAATTGCGCTGTCTTAGAGTCCTTAAGATTGATGGCAGAGGACTTTATCAACCTACCGTTGCCATCAGCTGCGCCGCGGTTGTGCTATTCTCTATGTCTGCTGCCAAAAGTCTAGAGCAATTAGAAGAGCTATCCATAGCAGATTGCAAGGATCTAAGGTGCGTAATTTCGGATGAAGACGATAACGGCAGTGAGGACATATCTCAAGCTCTTAGCAACTCACAATCAATGCTCCCAAATTTGAAGAAACTCTACATTCATTATTGTCCAAAGTTGGAATTTGTGCTCCCAAGATTCTGTGTTGGCCTTGAGAAACTGCAAGAGATAGATATTTTTAAGGCCTCAGAACTGAAATGTGTCTTTGGATTTGAATATCAACATGAGATCCAAACCAAGCTTCCCAATTTGGAATCACTCAAACTCCAGAACCTCGCGAATCTCGTTCGGATATGCAGTGGAAACAGTCAGCCTTTGTGGCCATCTTTGAGGGAGCTAAGATGTGTTAACTGTCCAAAATTGAACACATCTTGTATCAATGTTATGATTAGATCAACAATGAAACAGCAGCATCTGAATAAGGGAGATTCTCTTGAGGAGGATCAGGGAAAAAAATTGGCCTCAAGATTAGAACAAGTAGAATTTCGAGGCTTCTCCGAATTGAGGTTCATATGGTGTGATCCTACTAACAGAGAGATTTTGAGTCTTCAATATCTTCAATGTTTAAAGGTGGACGGCTGCGCGAAATTGAAATCCATCTTCTCGGCCGCGATTCTTAGAAGCCTACCGGAGCTGACATCGCTTGTTATACAAGGCTGCAATGAACTTGAAGAGATCATTTCAGAGAATGAAGAACTTAAATCAGTGTGTTTTCCAAAGTTAAGAAACTTAACTGTCAAGAATTGCAACAAATTAAAAAGCATTCTCTCTGTTTCTATGCTTGGAATGCCTCCTCAACTGAGTTATCTGCACATTTCAGATGCTGCTAAACTTGTGCAAGTTTTCAGGAATAGTAGTGAGAAGATTGTGTTTCCAAATCTCAGAGAAATGAAGCTGAACAAACTACCATGTCTAGTGGAAATTTGCAAAGGATTTGAACTATTACAGCCAATGAAAGCAATGAAGATCATAATAGATCAATGTCCAAATATTACTTCAATTTCTAAAGCAACTTAA 3480 0.4006 MAEIVISIAAKISEYVVDLAIRQGQYLFRVGRFIKNLEKEKQKLLSTLDGVQERVEATDKTEQVKESVLNWINEAEKLVKEVENLETEIETNGSCFKGQCSIGKRYNLCKKIQQKIESLINLNKNGQFETISFPAPIPGSEYLYPGNIVYFKSTQNASDQILEALRDDSINLIGLYGMGGSGKTILVKAVGNKAKAMNLFDRVVLATVKERILVILDDVWAKLKLEDIGIPCDVGNQSSCKVLLTTRLRGVCTLMNCQREVPLDLLSEEEAWMFFEEHAGIGDYSPSELLKVASNVALECKGLPIAIEAVGSSLKRKPIEAWKAALYSLKHSKPMDVEDGVRDAFSCIELSYNHLRSKRDELMFLMCSLFPEDHEIFVEDLIRCGVGLGICGKVESIDMARNQLRASINKLLDSCLLMHSDKNTDHVKMHDMVRDTALWIASRSANEKILVNLDKDLNTLVENGDINDSFAVSSWNKKTNRIAAQVTAPKLEFLLLSTRMSLDMTSSSFECLKEIKVMAIISEGYRTLLSLPDSTQSLTNLQTLCLRGWDLGDISFIQNLRKLEVLDLRACRFKQVPKEIEKLSKLKLLDLSGCEVLESYNSEAIGNCEQLEEFYVSGPSFQRDDKFIFPCQTFLDDVTSPNLQRYVLELGPLQTYGHGINENSSVRALSLKEFDISKFGASKMNLLQRAEDIYLNRLRGRCKNIAPELVQAAGSMNDLTKLRLRACSEIECIIDTASAGSYFQLDALIPEELYIRKCEQLHNIFPENCELRCLRVLKIDGRGLYQPTVAISCAAVVLFSMSAAKSLEQLEELSIADCKDLRCVISDEDDNGSEDISQALSNSQSMLPNLKKLYIHYCPKLEFVLPRFCVGLEKLQEIDIFKASELKCVFGFEYQHEIQTKLPNLESLKLQNLANLVRICSGNSQPLWPSLRELRCVNCPKLNTSCINVMIRSTMKQQHLNKGDSLEEDQGKKLASRLEQVEFRGFSELRFIWCDPTNREILSLQYLQCLKVDGCAKLKSIFSAAILRSLPELTSLVIQGCNELEEIISENEELKSVCFPKLRNLTVKNCNKLKSILSVSMLGMPPQLSYLHISDAAKLVQVFRNSSEKIVFPNLREMKLNKLPCLVEICKGFELLQPMKAMKIIIDQCPNITSISKAT 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212206g00002 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 357 IPR027417 -
Stsc212206g00002 1159 Gene3D Ribonuclease Inhibitor 466 948 IPR032675 -
Stsc212206g00002 1159 Gene3D - 351 438 IPR036388 -
Stsc212206g00002 1159 Gene3D - 208 263 IPR027417 -
Stsc212206g00002 1159 SUPERFAMILY L domain-like 428 1095 - -
Stsc212206g00002 1159 Gene3D - 144 207 IPR027417 -
Stsc212206g00002 1159 Gene3D - 265 350 IPR042197 -
Stsc212206g00002 1159 Gene3D Ribonuclease Inhibitor 958 1109 IPR032675 -
Stsc212206g00002 1159 Pfam NB-ARC domain 209 352 IPR002182 GO:0043531
Stsc212206g00002 1159 Pfam NB-ARC domain 157 207 IPR002182 GO:0043531
Stsc212206g00002 1159 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 970 1076 - -
Stsc212206g00002 1159 PRINTS Disease resistance protein signature 581 597 - -
Stsc212206g00002 1159 PRINTS Disease resistance protein signature 172 187 - -
Stsc212206g00002 1159 PRINTS Disease resistance protein signature 300 314 - -
Stsc212206g00002 1159 Coils Coil 68 92 - -
Stsc212206g00002 1159 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212206g00002 Stsc-Chr212206 6780 10558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212206g00002 170 618 WRKY Transcription Factor Family AT5G45050 22.841 2.19e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212206g00002 - - lang:109341976 1511.12