Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212202g00006 ATGGATGGTGTTAATTGGGAACATGCAACTTCAGAAATTGGAAGAAGTGACACACCAATGTTATGGAGGAGACAGCAACAAGGCCATGATGATGAAAGAGGAGGGTACACCATGCCCAATAATAGTAACTTAACTTCATGTGTTCTTACATACCCAAATTCATCAGAACAGTTGATTCATTTTCAGCAGTCACTATCAGAAGATGGACCTTACAATATGGATAATAATTACCATATAAGTGGTAATAAGTACATCATGGCAGATTTCAACATGGCCCAACACCAACATAGCAATAATAATGATTCTTGTTGTTCTCTTGAATCTTTTGATCATCATTGCTTGATTTCATCAGCTACTACAAATAGCAACACTAATGATGACACATGTGTAGCAGAAGATAATTATGATAATAATAATAAGGATAATGATGGTGGGATTTCAAAGATCTTGTTATCTGATGATGATTGCACAAACTACTTGTGGAACTTGAGTAGTTCTACTACTGATGCTGCTTCCTCTGCTGAATCTGAAAGCAACTATAATGATGCGTCCATGCTACCATGCTCTCATCAAAACAACTCAGATCATCAACAATACATCAATCAAGGAGGACAATTCAATCCTACTATTATTACTAATGAGGATCAATCACCAATTATCAAGATAGAGAATCCACCAAGATCCAAGAAACCCAGATGGGAAAAGACTCCATTTTCATCAACAATAAGTTTCCAAAACCCAAATGAAGCATCAGCAATAATGTCATCAAGTTCAGGCACTGATGAAGAAGCTGATCCAGAGGCCATAGCACAGATGAAGGAAATGATATATAGAGCAGCAGCATTCAGGCCAGTGAACTTGTTAGACTCAGATGAAGTGATTGAGAAGCCAAAGAGGAAGAATGTGAGGGTTTCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGAGAGAAAATCAGCCAAAAGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAAATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTATCTTAAGTTTTTGAGATCACAGGTTAAGG 1075 0.3786 MDGVNWEHATSEIGRSDTPMLWRRQQQGHDDERGGYTMPNNSNLTSCVLTYPNSSEQLIHFQQSLSEDGPYNMDNNYHISGNKYIMADFNMAQHQHSNNNDSCCSLESFDHHCLISSATTNSNTNDDTCVAEDNYDNNNKDNDGGISKILLSDDDCTNYLWNLSSSTTDAASSAESESNYNDASMLPCSHQNNSDHQQYINQGGQFNPTIITNEDQSPIIKIENPPRSKKPRWEKTPFSSTISFQNPNEASAIMSSSSGTDEEADPEAIAQMKEMIYRAAAFRPVNLLDSDEVIEKPKRKNVRVSSDPQTVAARQRREKISQKIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212202g00006 358 MobiDBLite consensus disorder prediction 221 244 - -
Stsc212202g00006 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Stsc212202g00006 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 357 IPR036638 GO:0046983
Stsc212202g00006 358 Gene3D - 309 358 IPR036638 GO:0046983
Stsc212202g00006 358 MobiDBLite consensus disorder prediction 1 39 - -
Stsc212202g00006 358 SMART finulus 310 358 IPR011598 GO:0046983
Stsc212202g00006 358 Pfam Helix-loop-helix DNA-binding domain 314 353 IPR011598 GO:0046983
Stsc212202g00006 358 CDD bHLH_AtIND_like 305 358 - -
Stsc212202g00006 358 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 95 358 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212202g00006 Stsc-Chr212202 24038 25388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212202g00006 91 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 44.850 6.67e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212202g00006 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212202g00006 - - aip:107616571 471.47