Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212200g00005 TTAGGCGAAGGAAGTATGACTGCTTTACCAATAGTTGAAACTCAATCGGGAGATGTTTCAGCTTATATTCCTACGAATGTAATTTCCATTACAGATGGCCAAATATTCTTATCGGCCGATCTATTCAATGCTGGAATAAGACCCGCTATTAATGTTGGTATTTCAGTTTCCAGAGTTGGATCGGCGGCTCAAATCAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTAGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTAGATAAAGCTACTCAAAATCAATTAGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACTGTGGAAGAACAGATAGTAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTTGTTGAGTTACGTGCTTACTTAAAGACGAATAAACCTCAATTCAAAGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCCTTTTAAAGGACGCTATTAAAGAACAGATGGAACTCTTTTTATTCCAGGAACAAGTAGAAAAAAATTGA 609 0.3711 LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFKEIISSTKTFTGEAEALLKDAIKEQMELFLFQEQVEKN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212200g00005 202 FunFam ATP synthase subunit alpha 65 196 - -
Stsc212200g00005 202 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 3 57 IPR000194 GO:0005524
Stsc212200g00005 202 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 65 193 - -
Stsc212200g00005 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 63 IPR027417 -
Stsc212200g00005 202 CDD ATP-synt_F1_alpha_C 68 193 IPR000793 GO:0015986
Stsc212200g00005 202 Gene3D - 65 193 IPR038376 -
Stsc212200g00005 202 Gene3D - 1 64 IPR027417 -
Stsc212200g00005 202 ProSitePatterns ATP synthase alpha and beta subunits signature. 48 57 IPR020003 GO:0005524
Stsc212200g00005 202 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 193 IPR005294 GO:0015986|GO:0045261|GO:0046933
Stsc212200g00005 202 Pfam ATP synthase alpha/beta chain, C terminal domain 64 188 IPR000793 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212200g00005 Stsc-Chr212200 27791 28399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212200g00005 3 70 Primary Pumps ATPases(2) AT4G38510 35.294 8.06e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212200g00005 K02111 - gmx:121173224 353.599