Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212197g00004 ATGCCCCCATCCCCAAGTTTCAACACAATAGACTACTCTCTTGATCATCACCACCAGCACCATCTCTACCCGCAAAATCAAGATCATCATCTCATGAAGTTTCGCCTAGGCGAAGGAGAAACTTCTGGTGAAGGGATAGCGGATTATATCCCTCAGCAACAGCCACAACCACCGCCGTCGTGTTTTTATCAAGCAAACTCTTCCTTTCATAAGCTCAGTTTCGCAGATGTGATGCAGTTTGCGGATTTCGGACCAAAGTTAGCCTTAAACCAAGGCAAGACCTGCGAAGAACCCGGGATCGACCCGGTGTACTTTCTCAAGTTCCCGGTCTTGAATGATAAGATGGAGGAGCAAAATATCCTGATGATGAACCATGAAAGCGGTGGGGGCGGCTGCGGTGACGGTGGTGGTCATGAAGAAGCAGAAAACAACGATGAGGAGAAAGGTGAAGACATAGGAGGAGCAGATCAAGAAGATGGAAGGATGAAAGGAGAAGAAGAAACTGCTCGGGTTTCCGAAGATAATAACAACAACTCGGTGCAGATTGGGTTTCTCGGCCATGGTGAAGATCTGGTGTTGAACCAGAAGAGGAACAACAACTCTACGACGACGTTGGTGCCGGAGAACAACAAGAACATGAAGAGGAAGAGGCCGAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGGATGACTCACATCGCTGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCTTACGTTCAAAGGGGTGATCAGGCATCGATAATTGGAGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTGCTTCAGTGCTTAGAATCACAAAAGAGGAGAAGGCTACTTGGAGAAGCACAATCAAGACAAGCTGGGGATTCGAATCTTGGAACGCAACAACAGCAGCAGCAGGCTCTTCAGCCACCATTCTTTCCGCCATTGGCATCTCCAAGTGACCAGATGAAGTTGGTGGAGTTGGAGACCGGACTCCGCGAAGAAACCGCGGAGAGCAAGTCTTGCTTGGCTGATGTCGAAGTGAAGCTTCTCGGGTTCGACGCCATGATCAAGATCCTTTCCAGGAGGAGGCCAGGACAGTTGATCAAGGCTATTGCTGCACTTGAAGATCTTCAACTGATTATTCTTCACACCAACATTACCACCATTGAACAGACAGTGCTTTATTCATTCAATGTCAAGGTGGCTAGTGAGTCAAGGTTCACCGCAGACGATATAGCCAGCTCCGTTCAACAGATATTCAGTTTCATCCAT 1308 0.4794 MPPSPSFNTIDYSLDHHHQHHLYPQNQDHHLMKFRLGEGETSGEGIADYIPQQQPQPPPSCFYQANSSFHKLSFADVMQFADFGPKLALNQGKTCEEPGIDPVYFLKFPVLNDKMEEQNILMMNHESGGGGCGDGGGHEEAENNDEEKGEDIGGADQEDGRMKGEEETARVSEDNNNNSVQIGFLGHGEDLVLNQKRNNNSTTTLVPENNKNMKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQAGDSNLGTQQQQQQALQPPFFPPLASPSDQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKAIAALEDLQLIILHTNITTIEQTVLYSFNVKVASESRFTADDIASSVQQIFSFIH 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212197g00004 436 MobiDBLite consensus disorder prediction 297 322 - -
Stsc212197g00004 436 MobiDBLite consensus disorder prediction 210 231 - -
Stsc212197g00004 436 FunFam Basic helix-loop-helix transcription factor 220 295 - -
Stsc212197g00004 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 280 IPR011598 GO:0046983
Stsc212197g00004 436 Pfam Helix-loop-helix DNA-binding domain 230 281 IPR011598 GO:0046983
Stsc212197g00004 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 295 IPR036638 GO:0046983
Stsc212197g00004 436 SMART finulus 235 286 IPR011598 GO:0046983
Stsc212197g00004 436 MobiDBLite consensus disorder prediction 138 172 - -
Stsc212197g00004 436 CDD bHLH_AtFAMA_like 232 299 - -
Stsc212197g00004 436 MobiDBLite consensus disorder prediction 301 322 - -
Stsc212197g00004 436 MobiDBLite consensus disorder prediction 195 231 - -
Stsc212197g00004 436 MobiDBLite consensus disorder prediction 125 182 - -
Stsc212197g00004 436 MobiDBLite consensus disorder prediction 195 209 - -
Stsc212197g00004 436 PANTHER TRANSCRIPTION FACTOR FAMA 148 432 IPR044283 GO:0003700|GO:0010052
Stsc212197g00004 436 Gene3D - 220 295 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212197g00004 Stsc-Chr212197 25949 28663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212197g00004 59 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.499 6.01e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212197g00004 HLH 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212197g00004 K26213 - gmx:100813515 536.569