Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212194g00002 ATGGAGGAAGAAGCTGATACCTACAATCCTCGTACCGTCGAAGAGGTATTCCGTGATTTCAAGTCTCGCCGTACTGCTTTGATCAAAGCCCTCACCATCGATGTTGAAGAGTTCTTCAAGCAGTGTGATCCCGAAAAGGAAAATCTTTGCCTGTATGGATTTCCTACCGAGGAGTGGGAAGTCAATCTGCCTGTTGAGGAGGTGCCTCCAGAGATTCCAGAGCCAACATTGGGTATTAACTTTGCCAGAGACGGGCTTGATAAACAGGAATGGCTGTCTTTGGTTGCTGCTCATAGTGATGCTTGGATACTCTCTGTGGCTTTTTATTTTGGTGCTAGAGTTGGATTTGACAGGGCTGATAGGAAGAGACTATTTACTATGATAAATGATCTTCCGACAATATTTGAGGTTGTTACAGGAATGGGAAAGACACCAGCTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCTAAGAAAAGTTCCGAATCTAAGCCGAAGAATTCAAAGGCAACACAATCAAAGGACAAGGATGGTGAGGAACAAGGAGGAGATGTTCCTTGTGGGGCATGTGGAGAGAGCTACGACGACGGGTTCTGGATTTGCTGTGACATATGCGAGAAGTGGTTCCATGGAAAGTGCGTTAAGATTACCCCTGCAAGGGCTGAACACATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGACAGTAA 723 0.4481 MEEEADTYNPRTVEEVFRDFKSRRTALIKALTIDVEEFFKQCDPEKENLCLYGFPTEEWEVNLPVEEVPPEIPEPTLGINFARDGLDKQEWLSLVAAHSDAWILSVAFYFGARVGFDRADRKRLFTMINDLPTIFEVVTGMGKTPASNHSSNKSKSNSKKSSESKPKNSKATQSKDKDGEEQGGDVPCGACGESYDDGFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212194g00002 240 ProSiteProfiles Zinc finger PHD-type profile. 185 236 IPR019787 -
Stsc212194g00002 240 SUPERFAMILY FYVE/PHD zinc finger 178 237 IPR011011 -
Stsc212194g00002 240 FunFam PHD finger alfin-like protein 180 235 - -
Stsc212194g00002 240 MobiDBLite consensus disorder prediction 142 184 - -
Stsc212194g00002 240 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Stsc212194g00002 240 ProSitePatterns Zinc finger PHD-type signature. 188 233 IPR019786 -
Stsc212194g00002 240 MobiDBLite consensus disorder prediction 156 183 - -
Stsc212194g00002 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Stsc212194g00002 240 SMART PHD_3 187 234 IPR001965 -
Stsc212194g00002 240 Pfam PHD-finger 188 236 IPR019787 -
Stsc212194g00002 240 CDD PHD_AL_plant 187 236 IPR044104 -
Stsc212194g00002 240 PANTHER CPG BINDING PROTEIN 9 240 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212194g00002 Stsc-Chr212194 12495 16989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212194g00002 1 239 Alfin-like Transcription Factor Family AT3G42790 70.400 1.03e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Stsc212194g00002 Alfin 9.2e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212194g00002 K26274 - tcc:18596192 344.354