Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212186g00001 ATGCGGCCTATCTTCTGTGGAAATTTCGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTTAAGCGATATGGGAAGGTTGATAGGGTGGACATGAAGTCTGGATTTGCTTTTATATATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTGTTGAATTTGGTCGGAAGGGGCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCGTCAGAAGGCCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTGATTAATTTCGATACATACCACACAAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGCAAGATAACTAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTCCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGATGATAGGCGAGGTGGATATAGTCCTGGGAGAGGTCATGATATCCCGCGTGACAGGAGCCGTGACGGAAGGCGTTCCCCAAGTCCATATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAAAGGGGTAGTCCTGACTATGGCCGAGGTCGCAGCCGCAGCCGCAGCCGCAGCCGTAGCCGTAGTCCCCTTCGAAGAGAGCAGCAAGCTAGTCCTGCTTATGTGCGTAGAAGCGCTAGTCCATATAGAAGAGAGAGGGATGGCTCTGAACCAGCACGTGGCTCTAGCCGAAGCCCTTACCACAAAGAGCGTGGGAGAGTTGACCATGGAATCTCTCCCACCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGTTCCTAGTCGAAGTCCTTACGATATTGAGAAGGCCAGCCCTGGAAATGGCCATGAGTCTCGGGATAGTCCTGATGGAAAAGGGAACCCTAGCCCTTACAACGGTTACGAAGAAAGCCCAAACACAGCACCTGAGCCTAGGGACAGCCCTAACTATGGTGCTCCTAAAAGTCCCATGCATGAAACATACCACAGTCAGTCACCCCCTGCAGAAGAATGA 1128 0.5035 MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGYSPGRGHDIPRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSRSRSRSPLRREQQASPAYVRRSASPYRRERDGSEPARGSSRSPYHKERGRVDHGISPTHSPDGRETSPQNGRVPSRSPYDIEKASPGNGHESRDSPDGKGNPSPYNGYEESPNTAPEPRDSPNYGAPKSPMHETYHSQSPPAEE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212186g00001 375 MobiDBLite consensus disorder prediction 167 228 - -
Stsc212186g00001 375 MobiDBLite consensus disorder prediction 254 290 - -
Stsc212186g00001 375 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Stsc212186g00001 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 165 IPR000504 GO:0003723
Stsc212186g00001 375 CDD RRM1_AtRSp31_like 2 73 - -
Stsc212186g00001 375 FunFam Serine/arginine-rich splicing factor RS31 86 176 - -
Stsc212186g00001 375 Gene3D - 1 86 IPR012677 -
Stsc212186g00001 375 Gene3D - 87 173 IPR012677 -
Stsc212186g00001 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Stsc212186g00001 375 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 109 - -
Stsc212186g00001 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Stsc212186g00001 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Stsc212186g00001 375 SUPERFAMILY RNA-binding domain, RBD 75 171 IPR035979 GO:0003676
Stsc212186g00001 375 SMART rrm1_1 3 70 IPR000504 GO:0003723
Stsc212186g00001 375 SMART rrm1_1 95 161 IPR000504 GO:0003723
Stsc212186g00001 375 MobiDBLite consensus disorder prediction 167 375 - -
Stsc212186g00001 375 MobiDBLite consensus disorder prediction 291 305 - -
Stsc212186g00001 375 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212186g00001 Stsc-Chr212186 1378 5561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212186g00001 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.044 6.29e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212186g00001 K12893 - gmx:100796509 616.305