Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212184g00002 ATGGGAGGAGAGAAGAAGAGAATAGAGAAGCTGAAGAAGAAGTCAAAATCCTCAGGAGGCTTCGAGTCTCTGAATCTTAACCCCAATGTATTCAAAGCAATCAAACGCAAAGGCTACAAAGTCCCCACTCCAATTCAAAGGAAGACCATGCCTCTCATCCTCTCCGGCCACGACGTCGTCGCCATGGCCCGCACCGGTTCCGGCAAAACGGCAGCGTTTCTTGTCCCAATGCTCCACCGCCTCAACCAGCATGTCCCTCAGGCTGGTGTCAGAGCCCTCATATTATCACCCACGAGGGACTTGGCCCTTCAAACCCTAAAATTCACCAAAGAGCTTGGTCACTTCACTGATCTTAGGGTTAGTTTGTTAGTTGGTGGAGACAGCATGGAGAGCCAGTTTGAGGAACTGGCTCAGAGCCCTGACATTATAATTGCCACCCCTGGTAGGCTTATGCACCATTTGTCTGAGGTAGACGACATGTCGTTGCGTACCGTTGAGTATGTTGTTTTTGATGAGGCTGATTGTTTGTTTGGCATGGGTTTTGCTGAGCAATTGCACCAGATTCTTTCACAGCTTGGCGAGAATCGCCAGACGCTGTTGTTTAGCGCTACTATGCCCAGTGCGCTAGCAGAGTTCGCCAAGGCCGGCCTGCGAGATCCTCAGCTTGTTAGGCTTGATTTGGAGACTAAAATTAGCCCTGATTTGAAGGTTGTGTTTTTTACTTTGAGGCAGGAAGAGAAGTATGCTGCGTTGCTCTATTTGGTTAGGGAACGGATCAGTTCGGATCAGCAGACCTTGATTTTTGTATCCACAAAACACCATGTTGAGTTTTTGAATATATTGTTTAGGGAAGAAGGGATTGAACCATCTGTGTGTTATGGTGACATGGATCAAGATGCTAGAAAAATACATGTATCAAGGTTTAGGTCAAGGAAAACAATGCTGTTGATTGTGACTGATGTTGCGGCTCGTGGCATTGATATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAGATATTTGTTCATCGTGTTGGAAGGGCTGCAAGGGCTGGTCGTACCGGCACTGCTTATTCCTTTGTGACATCGGAGGATATGGCTTACCTATTGGATCTTCATTTGTTTCTGTCGAAGCCGATAAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGAATATGGATGGAGTAATGTCAAAAATTGAACAGGCAATGGCAAATGGAGAAACCGTTTATGGCCGATTCCCTCAAACAGTCCTTGACCTTGTTTCCGATAGAGTTAGGGAAATTCTTGATACTAATGCAGAACTGGAGTCATTGCAGAGAACCTGCAATAATGCATTCCGTTTATATATGAAAACAAAACCCTTACCATCCAAAGAGTCTATTAGAAGAGTAAAGGATTTGCCACGTGAGGGTCTGCATCCGATGTTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCCCTTGCATTTTCAGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATCTTGGAAGCTGAAGGGGAAGCAGCTAGATCAAAGCATGTTCAGGGTCAATGGGTTGATGTGATGAAAAGGAAGAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGTCTAAGAGTAGCATGGAAAAGGAGGAAATTCAACCAGAAGATATTCCTTCCATGGAGAAAGGGAGAAAAGCCTCTGGTTCTAAGAGAAAGCCACAGAGTTTTGTGGATGAGGAATACTATATAAGTTCAGTACCTAAAAATCAACACATGGAGGCAGGCCTTTCTGTGAAAGCTAATGAAGAATTTGCCGCAAACAGATTGGATTCTGCTGTCTTAGATCTGGTTGCAGATGATAGTACTGGCATTCAGAAACAAAGATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAATAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGGGCAAAAACAAAGGCCACCAAGACAGGCATATATAAGAAGTGGAAAGAGCGTTCACACACTAAGGTTTCTCTTAAGTGGACAAATAACGATGGTGATGCTCAAGAATCCACAGGTTTTAAAGGATCTTACAGAGGAAGAGGTAAGAATTTCAAAGGCGGCAGTAAGAGGCAGCAATCAATGCCCAATTCTCATGTTCGTTCAGAGATCAAAGATTTTGATCAAATTCGAAAGGAGAGGCAGAAAAAGGCTGAAAGGATTTTGCATTTCAAGAGCAAGGCAGGAGCAAAGGGTAAAAAATTTAGTAAAAATGGAAAGAAAAGAAGAGCTAAATAG 2328 0.4347 MGGEKKRIEKLKKKSKSSGGFESLNLNPNVFKAIKRKGYKVPTPIQRKTMPLILSGHDVVAMARTGSGKTAAFLVPMLHRLNQHVPQAGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILSQLGENRQTLLFSATMPSALAEFAKAGLRDPQLVRLDLETKISPDLKVVFFTLRQEEKYAALLYLVRERISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQNMDGVMSKIEQAMANGETVYGRFPQTVLDLVSDRVREILDTNAELESLQRTCNNAFRLYMKTKPLPSKESIRRVKDLPREGLHPMFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEAARSKHVQGQWVDVMKRKRAIHENIINLVHEQSKSSMEKEEIQPEDIPSMEKGRKASGSKRKPQSFVDEEYYISSVPKNQHMEAGLSVKANEEFAANRLDSAVLDLVADDSTGIQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHTKVSLKWTNNDGDAQESTGFKGSYRGRGKNFKGGSKRQQSMPNSHVRSEIKDFDQIRKERQKKAERILHFKSKAGAKGKKFSKNGKKRRAK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212184g00002 775 MobiDBLite consensus disorder prediction 731 756 - -
Stsc212184g00002 775 CDD SF2_C_DEAD 242 366 - -
Stsc212184g00002 775 Gene3D - 3 226 IPR027417 -
Stsc212184g00002 775 MobiDBLite consensus disorder prediction 1 20 - -
Stsc212184g00002 775 MobiDBLite consensus disorder prediction 757 775 - -
Stsc212184g00002 775 Pfam DBP10CT (NUC160) domain 620 681 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Stsc212184g00002 775 MobiDBLite consensus disorder prediction 548 577 - -
Stsc212184g00002 775 SMART DBP10CT_2 620 682 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Stsc212184g00002 775 SMART helicmild6 276 357 IPR001650 -
Stsc212184g00002 775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 396 IPR001650 -
Stsc212184g00002 775 Pfam Helicase conserved C-terminal domain 247 357 IPR001650 -
Stsc212184g00002 775 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Stsc212184g00002 775 Gene3D - 236 472 IPR027417 -
Stsc212184g00002 775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 223 IPR014001 -
Stsc212184g00002 775 MobiDBLite consensus disorder prediction 692 775 - -
Stsc212184g00002 775 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Stsc212184g00002 775 MobiDBLite consensus disorder prediction 547 577 - -
Stsc212184g00002 775 SMART ultradead3 38 238 IPR014001 -
Stsc212184g00002 775 CDD DEADc_DDX54 19 224 IPR033517 -
Stsc212184g00002 775 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 685 - -
Stsc212184g00002 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 375 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212184g00002 Stsc-Chr212184 8328 13935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212184g00002 21 390 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 3.71e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212184g00002 K14808 - gmx:100806274 1267.29