Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212175g00001 ATGGGTTATTTATGTGACTTTTGTGGAGAGCAAAGGTCCTTGGTATACTGTCGATCAGATGCAGCATCCTTATGTTTGTCATGCGATCGGAATGTTCATTCGGCTAATGCCCTTTCTAAGCGCCATTCCAGAACCCTCGTATGTGAGAGATGTAATTCACAACCTGCCTTTGTAAGGTGTGCTGAGGAAAAAATTTCACTCTGTCAGAACTGTGACTGGCTCGGTCACGGTACCACTCCCTCTGCTTCGGCACATAAGAGGCAAACCATCAATTTATATTCGGGCTGTCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTCAGATATACCTGCTATGGGTGAAACTTGTGAGCAGGAACTTGGTTTAATGAGCATTAGCGAGAACGGTGAAAAGAGTACTTGGGTTCCTCCAGAAAACCAGAATGCATCTAGTTCTGCTCAAGTGACAAATCCACCCATCAAGGATAAATCTTGGGTTGGCACATCTTCAATGCCCGAGTCGGGCTCAGAACCTCGTATCCTGGAGCCGCCAGCTGGACCTTCCAATGCATGCGTGCCTAAGTTATATTGTCCCGTGAAAACGGCTCCTGCACTCTGTGAAGATGATGATATATATGACGATTTCAACATGGATGAAGTGGATTTGGATCTTGAAAACTATGAGGAACTTTTTGGTGTGGCACTCAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGGATTGATAGCTTATTTGGGACAAAGGAAATGTCTGCCAGCGCTGGTGACTCCAATTGTCAGGGTGCGGTTGCTGCTGAGGGCTCAACGGGATTAATCAATGCAACACAACCAGCATGCAGCAATGCTGAATCTGCAGATTCAATGATGAGCGCTAAAACTGAACCAATTATTTGTTTTACTGGAAGGCAATCCCAATCAAACATTTCTTTTTCTGGTGCAACTAAAGATGGTGGTGGTGGTGGTGGTGGAGACTATCAAGACTGCGGGGCTTCTTCGATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTGGCCCTGAGAGCTCTATGCAATCTGCTAACCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGACACGAAAGTTTGAAAAGCGAGTAAGGTATGCCTCTCGTAAGGCTAGGGCTGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCCGGTGATGTCTATGACTACGACCCGATGAGCCAAACCAGAAGTTACTGA 1245 0.4627 MGYLCDFCGEQRSLVYCRSDAASLCLSCDRNVHSANALSKRHSRTLVCERCNSQPAFVRCAEEKISLCQNCDWLGHGTTPSASAHKRQTINLYSGCPSAAEFSSIWSFFSDIPAMGETCEQELGLMSISENGEKSTWVPPENQNASSSAQVTNPPIKDKSWVGTSSMPESGSEPRILEPPAGPSNACVPKLYCPVKTAPALCEDDDIYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKEMSASAGDSNCQGAVAAEGSTGLINATQPACSNAESADSMMSAKTEPIICFTGRQSQSNISFSGATKDGGGGGGGDYQDCGASSMLLMGEPPWCPPGPESSMQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDVYDYDPMSQTRSY 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212175g00001 414 ProSiteProfiles CCT domain profile. 357 399 IPR010402 GO:0005515
Stsc212175g00001 414 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Stsc212175g00001 414 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 401 - -
Stsc212175g00001 414 CDD Bbox1_BBX-like 47 90 - -
Stsc212175g00001 414 MobiDBLite consensus disorder prediction 132 180 - -
Stsc212175g00001 414 MobiDBLite consensus disorder prediction 366 385 - -
Stsc212175g00001 414 Pfam CCT motif 357 399 IPR010402 GO:0005515
Stsc212175g00001 414 CDD Bbox1_BBX-like 4 47 - -
Stsc212175g00001 414 MobiDBLite consensus disorder prediction 132 171 - -
Stsc212175g00001 414 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc212175g00001 414 SMART bboxneu5 48 90 IPR000315 GO:0008270
Stsc212175g00001 414 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212175g00001 Stsc-Chr212175 18471 23735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212175g00001 1 414 C2C2-CO-like Transcription Factor Family AT3G07650 54.801 9.99e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc212175g00001 CCT 6.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212175g00001 - - gmx:100783016 684.485