Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212170g00001 ATGGGAGGATGCTGCAGCCATGAGCTTGGTGGTCTTCGAGGGAGGATTGAGATGAGCGAGTTAGAAGATGAACATGAGCTTGAGTTTGAGAGCAATGATATAGAGTATGGTTATGGTGGTGAAATCATAAGGCTGAAAGGGTGTTCTAGGTTTGTTACAATGTATAGCCAACAGGGTAAGAAAGGTGTCAATCAAGATTCTATGACTGTTTGGGAGGATTATACTGGAGAAAAAGACATGATCTTCTGTGGTGTTTTTGATGGGCATGGTCCTCTAGGCCACAAAGTTTCCCAATATATTCGCGACAATCTACCTTCGAAACTCTCTGCAGCAATCAAATTAGCACAACAAAAGGCCAACAACTATTATGATGATACTGATGCGGATACAAGCACATTTGATGATACTAATAACCAGCAAAACATGTCCCTTGCTTCCTGGGAGGGATGCTTTATCAAGACATTCAAGGAAATGGATGATTACCTCGCCAAGGACATTAACACCGACAGCTATTGCAGTGGTTGCACTGCCGTTACTGTGATTAGACAGGGTGATCAACTTATAATCGGAAATATAGGAGATTCTCGTGCGATTCTTTGTACAAGAGAAAGAGATCAACTTATTCCTATTCAACTTACTGTTGATTTGAAACCAGATCTTCCAAGTGAAGCTACAAGGATCATGAATTGTGAGGGCAGAGTTTTTGCTGCAGAGGAAGAACCAGATGTGTGCCGAATATGGATGCCTGATGATGACTGTCCTGGATTAGCTATGTCAAGATCTTTCGGAGACTTTTGCCTTAAAGATTATGGCCTCATCTCGATTCCTGATGTATTTTATAGGAAACTTTCCAAGCAAGACGAATTTGTGGTCTTGGCAAGTGATGGGATATGGGATGTGCTCACTAACAATGAAGTTATCAACATAATTGCTTCAGCACCAAACAGAGGCATAGCTGCCAAATTGCTTGTAAAAAAGGCTGTTCGAGCATGGAGATACATGTATCCCAGCTCCAAGGTAGATGATTGCTCAGTCGTATGCTTGTTTTTGGATGATGAGCAACCAGTCTTATCCCACTCCCAGTCAAAGAACGTTGGTAAACATCCCAGCAAACACATTTATCGCAATCGATCTGCTAGAAATGAAGACAACGATACAGTGGCCGGAAAAGTCGGGGTAGAGCTTAATGTGAATGAAGAATGGAAGGCTCTTGGAGGGTTAGCTAGGGCCAACTCCTTATCAAAACTTCCAAGACTTCCAAGAGACTTGAGTAGAAGACAAGCATCAACTAGGTTCATTCAAGGAGCAAGGTCTAAAGCAACAAGTTTAACAACTTGGAGCAAAGATCCTTTGGCCAATATGGGAACCCCAATTGCAACCAACTTGGTTACTTACAACTTATCTGAAGGGCAGTCCATCAATAGGCCTCCCTTGTTCACTGGAAAGAACTATCCCTACTAG 1461 0.4237 MGGCCSHELGGLRGRIEMSELEDEHELEFESNDIEYGYGGEIIRLKGCSRFVTMYSQQGKKGVNQDSMTVWEDYTGEKDMIFCGVFDGHGPLGHKVSQYIRDNLPSKLSAAIKLAQQKANNYYDDTDADTSTFDDTNNQQNMSLASWEGCFIKTFKEMDDYLAKDINTDSYCSGCTAVTVIRQGDQLIIGNIGDSRAILCTRERDQLIPIQLTVDLKPDLPSEATRIMNCEGRVFAAEEEPDVCRIWMPDDDCPGLAMSRSFGDFCLKDYGLISIPDVFYRKLSKQDEFVVLASDGIWDVLTNNEVINIIASAPNRGIAAKLLVKKAVRAWRYMYPSSKVDDCSVVCLFLDDEQPVLSHSQSKNVGKHPSKHIYRNRSARNEDNDTVAGKVGVELNVNEEWKALGGLARANSLSKLPRLPRDLSRRQASTRFIQGARSKATSLTTWSKDPLANMGTPIATNLVTYNLSEGQSINRPPLFTGKNYPY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212170g00001 486 Pfam Protein phosphatase 2C 76 326 IPR001932 -
Stsc212170g00001 486 SMART PP2C_4 41 348 IPR001932 -
Stsc212170g00001 486 ProSiteProfiles PPM-type phosphatase domain profile. 51 350 IPR001932 -
Stsc212170g00001 486 SUPERFAMILY PP2C-like 48 352 IPR036457 -
Stsc212170g00001 486 MobiDBLite consensus disorder prediction 359 381 - -
Stsc212170g00001 486 Gene3D - 47 352 IPR036457 -
Stsc212170g00001 486 PANTHER PROTEIN PHOSPHATASE 53 348 IPR015655 GO:0004722|GO:0006470
Stsc212170g00001 486 CDD PP2Cc 50 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212170g00001 Stsc-Chr212170 15468 22353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212170g00001 1 382 PP2C-type Phosphatase Gene Family AT5G01700 48.177 1.03e-128 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212170g00001 - - gmx:100783603 652.899