Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212169g00007 ATGTCGAAGCTGTCTCGTCTTCTGCCTTCCATTTCCACTTCCAGGGCCTTTTCTACAGCTACCAATAAATATGCTGCTAAAGGATATACCTCTAATCGCATATTTGCTCCATATTCCGTTTACAAGGGCAAAGCCGCTTTCTCTTTAAGTCCTATCCTTCCTACTTTCACTAAGTTGGATACTGGGGCCGTTGTAGTTGATCGTCGTGGTTCAATGATGATGATTTTCATGCACGCCATTGGCGAGCGCAAATATGACTGGGAGAACAAACAGAGATTCGCTCTCTCGGCGACTGAAGTTGGCTCTTTGATAAGCATGGGTCCTCAGGATTCTTGTGAATTCTTCCATGACCCGTCAATGTTATCAAGTAATGCTGGTCAAGTGAGAAAAAGCTTGTCAATTAAGCCTCATGCAAACAGCAATGGCTACTTCATATCTCTGAATGTTGTCAACAATCTGTTAAATACCAAGGATTTCTTGAGTGTCCCTAGGGAAGGAATAAAGACAATGACTATCCTGGCATTTTGTTTGCTTATTGTTCCAGAAAGTATTAGGGCCAAAGCTAGAAATGAGATAAGGATTGAGATCGAAGGAGATAGAACTAGAGAGGTCTAG 615 0.4228 MSKLSRLLPSISTSRAFSTATNKYAAKGYTSNRIFAPYSVYKGKAAFSLSPILPTFTKLDTGAVVVDRRGSMMMIFMHAIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANSNGYFISLNVVNNLLNTKDFLSVPREGIKTMTILAFCLLIVPESIRAKARNEIRIEIEGDRTREV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212169g00007 204 SUPERFAMILY ssDNA-binding transcriptional regulator domain 31 163 IPR009044 GO:0003677|GO:0006355
Stsc212169g00007 204 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 16 163 IPR013742 GO:0003697|GO:0006355|GO:0006952
Stsc212169g00007 204 Gene3D Transcriptional Coactivator Pc4; Chain A 24 184 IPR009044 GO:0003677|GO:0006355
Stsc212169g00007 204 Pfam Whirly transcription factor 40 163 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212169g00007 Stsc-Chr212169 22653 25201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212169g00007 5 163 Whirly Transcription Factor Family AT1G71260 62.130 5.66e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Stsc212169g00007 Whirly 2.3e-48 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212169g00007 K26561 - gmx:100817863 255.373