Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212169g00004 ATGGAACCTAATGACAACCAACTCAGCTCCTACTTTCACCAACAACAACAACAGCACCACCATCAGCAACAGCATCACCACCACCAGAGCGCCGCCGCGCCCTCCGCCGTCGGAGCCGCTACCGCGGTCTCGCCCACCAACGGCCTTTTGGGGAACACCGATGGGACCCACTCCCACATGCTGTACCCTCACACGGTACCCTCGGCGGTGTCGTCGCAGCTGGTGGAGCCGCCGGCGAAGCGGAAGAGGGGTCGGCCTCGCAAGTACGGTACTCCCGAGCAAGCCCTCGCTGCGAAGAAAGCCTCTACGACGTCATCTTCCGCCGCTCACTCGTTCTCCCCAACCTCCTCCTCCTCCGCCGCAAAGAAATCGCTTCATCACCAGCCCCGTGCCCTGGGTGGTTCCTCTTCTCCTTCCTCCTCTTCCAAGAAATCGCACTCAATTGGTTTAGGACAAGGCTTCACTCCTCATGTCATTGCCGTAGGTGCTGGAGAGGATGTTGGCCAAAAGATTATGTTATTTATGCAACAAAGTAAGCGTGAGATGTGCATTTTGTCTGCATCTGGTTCCGTATGCAATGCCTCTCTTCGTCAGCCAGCAACCTCAGGAGGCAATGTTACGTATGAGGGTCGGTTTGATATTATTTCTCTTACTGGTTCCTATGTTCGTAATGAAGTCGGAAGTCGATCTGGGGGTCTGAGTGTATGCTTATCTAATACTGATGGGCAAATAATTGGTGGTGGAGTTGGTGGGCCCCTTAAAGCGGCTGGTCCAGTTCAGGTTATTGTTGGTACATTTTTTGTTGACTCCAATAAGGATAGTGGTGCCGGTGCAAAAGGCGATGCCTCTGCCAGTAAGTTGCCGTCACCAACTGGTGACTCAGTATCAAGTTTAGGTTACCGCCCAGTTGACTCTACTGGTGGAAATCCAATCCAGGGAAATGAAGAGCATCAAGCTATGGGGGGAAGTCATTACATGATTCAACAGCTTGGTTTGCACATGACACCTCCCCGGTCAACAGACTGGGGTGGCCATCCGGAATCAAGAAATTCCGGCTATGATCTGACAGGAAGAACAGGTCACGGGGTGCACCAATCTCCGGAGAACGGGGGCTATGACCAGATCAATGATTGA 1134 0.5309 MEPNDNQLSSYFHQQQQQHHHQQQHHHHQSAAAPSAVGAATAVSPTNGLLGNTDGTHSHMLYPHTVPSAVSSQLVEPPAKRKRGRPRKYGTPEQALAAKKASTTSSSAAHSFSPTSSSSAAKKSLHHQPRALGGSSSPSSSSKKSHSIGLGQGFTPHVIAVGAGEDVGQKIMLFMQQSKREMCILSASGSVCNASLRQPATSGGNVTYEGRFDIISLTGSYVRNEVGSRSGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFVDSNKDSGAGAKGDASASKLPSPTGDSVSSLGYRPVDSTGGNPIQGNEEHQAMGGSHYMIQQLGLHMTPPRSTDWGGHPESRNSGYDLTGRTGHGVHQSPENGGYDQIND 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212169g00004 377 MobiDBLite consensus disorder prediction 334 377 - -
Stsc212169g00004 377 Gene3D - 156 278 - -
Stsc212169g00004 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 17 304 IPR039605 GO:0003680
Stsc212169g00004 377 MobiDBLite consensus disorder prediction 1 149 - -
Stsc212169g00004 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 266 IPR005175 -
Stsc212169g00004 377 MobiDBLite consensus disorder prediction 97 149 - -
Stsc212169g00004 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 267 - -
Stsc212169g00004 377 MobiDBLite consensus disorder prediction 1 18 - -
Stsc212169g00004 377 ProSiteProfiles PPC domain profile profile. 151 291 IPR005175 -
Stsc212169g00004 377 MobiDBLite consensus disorder prediction 287 313 - -
Stsc212169g00004 377 MobiDBLite consensus disorder prediction 40 54 - -
Stsc212169g00004 377 CDD DUF296 155 266 IPR005175 -
Stsc212169g00004 377 MobiDBLite consensus disorder prediction 274 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212169g00004 Stsc-Chr212169 12475 17134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212169g00004 54 374 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 48.837 2.81e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212169g00004 - - adu:107491998 580.867