Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212169g00001 ATGCATTTGACCCACGAATTGAAACCAAGCTCGCCGAATAAATTAAAAATTCCTATTCCTATAAGTGATCCAGATGTGTTGGAGATAAGAAAGAGTAAGGGTGTGCTGATTTTGAGGCCTGATTCTGCATTGGGAGCTGCCAGTGGTGGTGAATCTGGGGAGTCGGGTTCTGTAGCAGCTATCCGCATGCCAATGCTTCATGTTTCCAATTTCAAAGGAGGGACACCGGAAATGGTTGAGACATCTTATGCTATACTCGTTTTGGTTCTCCCAAATTTGAACTCCAGGTCTTGGAACTCCCATGAGATGGAGATAGTCGAAGTAGTTGCTGATCAAGTTGCTGTAGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTGATGAGGCAGAAACTTGCAGAGCAAAACCGAGCACTGCAACTGGCTCAAAAGAGTGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTCAGAAAGTCATGAGTAATGGAATGCGAAGGCCTATGCATTCAATCCTTGGCTTGCTTTCAATATTTCAAGAGGACAATCTAAGACCTGAACAGAAGATTATTATTGACACAATGTTGAGAGTTAGCAACGCACTCTCCAGTTTGATTAATGATGCTTTACCAGGATTGGTTATAGGTGACGAGGCAAGGTCTTTTCAAGTAATTTTGCACTTGATAGGTTACCTGTTGAACATGTATGACAAAGGGACTCTCATTTTTCGAGCACTTCTTGAAAGCGATAGTGGAGATAAGGATGATAAAGGTTTTGGGATATGGAGATCAAGTGTGCAAAATGACTATGTATATGTAAAATTTACTTTTCAGGTAACGGGTATTACTTCCGAATCAGATGTATTAAATTCAGCAAAACATTATTCTGGTAGAAGGCAATACAGCAATGAACCTAATGAGGGCCTGAGCTTCAGCATGTGCAAGACACTGGTGCAGATGATGCAAGGAAATATCTGGATGTCACCAAACTCGTCGGGTTTGGCGCAAGGCATGACACTTCTTCTCAAGTTTCAGCTAGGTCGACCCTCGGTTGGAAGATCCACTCTTGTACTAAAAGATGCTCCAAACCCACAGTTCAGAGGCCTTAAGGTTCTTTTGGCGGATGACGATGATGTAAACAGGACTGTGACAAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAACCGCTGTTTCATCAGGTTTCCAGTGCCTCAGTGCTATAAGTGCCTCCGGCAACACGATCAAAATTATCCTCTTAGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTGGCTAGAAGGATCCGTAAGTTCCACAGCCGTAATTGGCCCATGATTATAGCTCTTACAGCGAGCGCGGAAGATGATGTGAGGGAGAAATGCATACAAGTGGGAATGCATGGATTGATTCGCAAACCGATCCTTCTTCAAGATATTGCTGATGAACTCAGGACAGTGTTGCAGCGTGCAGGTGAAAAATTGTGA 1488 0.4368 MHLTHELKPSSPNKLKIPIPISDPDVLEIRKSKGVLILRPDSALGAASGGESGESGSVAAIRMPMLHVSNFKGGTPEMVETSYAILVLVLPNLNSRSWNSHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQLAQKSAMMASQARSSFQKVMSNGMRRPMHSILGLLSIFQEDNLRPEQKIIIDTMLRVSNALSSLINDALPGLVIGDEARSFQVILHLIGYLLNMYDKGTLIFRALLESDSGDKDDKGFGIWRSSVQNDYVYVKFTFQVTGITSESDVLNSAKHYSGRRQYSNEPNEGLSFSMCKTLVQMMQGNIWMSPNSSGLAQGMTLLLKFQLGRPSVGRSTLVLKDAPNPQFRGLKVLLADDDDVNRTVTKKLLEKLGCQVTAVSSGFQCLSAISASGNTIKIILLDLHMPEMDGFEVARRIRKFHSRNWPMIIALTASAEDDVREKCIQVGMHGLIRKPILLQDIADELRTVLQRAGEKL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212169g00001 495 Gene3D - 139 211 - -
Stsc212169g00001 495 FunFam Ethylene receptor 367 491 - -
Stsc212169g00001 495 SUPERFAMILY CheY-like 365 490 IPR011006 -
Stsc212169g00001 495 CDD HATPase_ETR2_ERS2-EIN4-like 210 342 - -
Stsc212169g00001 495 Gene3D - 78 134 IPR029016 -
Stsc212169g00001 495 Coils Coil 123 143 - -
Stsc212169g00001 495 CDD REC_ETR-like 369 484 - -
Stsc212169g00001 495 ProSiteProfiles Response regulatory domain profile. 370 488 IPR001789 GO:0000160
Stsc212169g00001 495 Pfam Response regulator receiver domain 371 483 IPR001789 GO:0000160
Stsc212169g00001 495 SUPERFAMILY GAF domain-like 15 120 - -
Stsc212169g00001 495 SMART REC_2 369 484 IPR001789 GO:0000160
Stsc212169g00001 495 Pfam GAF domain 50 117 IPR003018 GO:0005515
Stsc212169g00001 495 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 1 210 - -
Stsc212169g00001 495 Gene3D - 369 494 - -
Stsc212169g00001 495 CDD HisKA 151 210 IPR003661 GO:0000155|GO:0007165
Stsc212169g00001 495 FunFam Ethylene receptor 4 120 211 - -
Stsc212169g00001 495 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 138 210 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212169g00001 Stsc-Chr212169 3013 5502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212169g00001 1 493 Miscellaneous Gene Families AT3G04580 51.619 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc212169g00001 Response_reg 5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212169g00001 K14509 - gmx:100805023 720.694