Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212165g00002 ATGCTGATATTTACTCTTTCAACTGTTCTGTTATATTCTTCTTGTTCTGAAGGACTCAATGCAGAGGGTGAATACCTTCTTGACATAAAAAGGAGATTCTATGACAAATACAAGCACTTGGAAAATTGGAACTCAAGTGATTCCACCCCTTGTGGGTGGAAGGGTGTGAGATGCAGCAGCTCCAGCAGCGAACCGGTGGTCGTGTCTCTCGACTTGCATTCGATGAACCTCTCCGGATCTTTGGCTCCCAGCATTGGTGGCTTGGTTTACTTGTATCACCTTAACCTCTCTGGAAACTCTTTGACTGGGATCATACCAAAACAGATTGGAAACTGCTCAAGTTTGCAGCTTCTTGGTCTCAACAACAATCTGTTAGAAGGCCGAATCCCTGCCGAAATCGGTAGGCTTTCGGCCTTAACAGAATTGTACATTCACAGCAACAGACTGTCCGGGCATTTTCCGGTGGAAATTGGTAACCTTTCTTCACTCACAATATTTACTTCATACACCAATAATCTCACTGGATCTTTGCCAAGCTCTTTTGGCAACCTTAAGAACTTGAGACGTTTTCGAACCGGTCAGAACATGATTTCGGGAAGTCTACCCTCAGAGATAGCTGGATGTCAGAGCTTGGAGTATCTTGGTTTAACTCAGAATCAGATTAGTGGTGAAATTCCAAAGGCACTTGGACTGCTCAAGAATATAAAATTCTTGGTCCTTAGGGAAAATAACTTCAATGGAGCCATACCAAAGGAGCTTGGAAACTGCACAAATTTAGAGGTTCTAGCTCTATATAGGAACATGCTTGAGGGAGAAATCCCCAAGGAGCTGGGAAACCTTATGCTCCTAAAGAAGTTGTACCTTTACCACAATGAGTTGAGTGGAGAAATTCCAAGAGAGATTGGGAACCTCACTCTTGCAACTGAGATTGACTTTTCAGAGAATCTCTTGATAGGAAGAATTCCAGCAGAGTTGGCTAAGATTCCAGGGCTACAATTGCTTCATCTCTTCCAGAACATGCTAACCGGAATCATCCCGAATGAGCTCACAACTTTGAAGAACCTCACTGATGTTGATCTCTCTATCAACTATCTCACAGGTACTATTCCTGTTGGATTTCAGGACTTACTCAACTTGACCACCCTGCAACTCTTCAACAACTCACTGAGTGGTTCGATTCCTCGGGCACTCGGAGCAAACAGCCGGCTCTGGGTGCTCGATGTATCGTTCAACAACTTGGTGGGAAGAATTCCAGTTTATCTGTGCCAAAATTCTAAGCTGATGCTGTTGAACTTGGGATCAAACAAGCTCAGTGGAAGTATCCCTTATGGGATTACAACCTGCAAGTCTTTGGTTCAGCTTCGTCTCTTTGCTAACAACATTCGAGGCAGGTTTCCTTCTAATTTATGCAGACTTGTTCATCTTTATGCACTGGAATTGGATCAGAATGACTTCACTGGTCCTGTTCCTGCACAAATTGGGAACTGCATAAGCTTGCAGAGACTTCACCTTTCCAACAACCGTTTCTTCTCTGAGATACCAAAAGAAATCGGTAACCTCTCGCAGTTAGTAACCTTTAATGTCTCATCAAATTATCTTCATGGTAGATTACCTATGGAACTCTTCAACTGTAAGAAGCTCCAACGGCTTGACCTCAGCCATAACAAATTTGTAGGTCCTTTTCCAGCTGAGATAGGAACTCTTTCTCAGTTGGAGCTTCTGAGGCTCTCAGAAAACAACTTTTCAGAGGAAATACCTGTGTCAATAGGGAAGCTTGTGCGTTTGACTGAACTACAAATGAGTGGAAACTCCTTCTCCAGTACCATACCGGCCGAATTGGGTGCCCTCTCGGCCTTACAAATTGCATTGAATCTAAGTTATAACAAACTCACAGGCCAAATCCCCTTTCAGCTTGGGAAACTTAACATGCTAGAATCCCTCCAACTCAACAACAACAATTTAAGTGGCGAAATTCCATCCACTTTTGTGCAGCTATCAAGTTTATTGTCCTGCAACTTCTCAAACAATGATCTTTCAGGGCCTTTACCTTCCTTACCTCTCTTCCAGAACTCCACATTCAGTTGCTTCTTTGGAAACAAAGGACTATGTGGTGGAAGGCTTCGCCCTTGCCCGAAAAAGCCTTCGCGGTCTCCGAATAATCTAGGCAAGGTTCTGGCTATAGCTGCAACCATTGTTAGTGCTGTTTCTTTAGTCTTGATTGTGGCAATTATATATTTCATGATTCGTCCTGTGGATTCCGTTTCGCCGCAGCAAGATATTGATGCATCACATTCTCCACCTGTTTCAGACATGTACTTCTTCCCAAAGGAGGTGTTAACATTCCAAGACATGGTTGAAGCCACTGAGAATTTTCACTCCAACTTCCGTGCCGAAATCTCGACGTTGGGGAAAATCCGGCACAGAAATATTGTGAAATTGCATGGCTTCTGCACCTACCATGGCTCAAAAATAATACTGTATGAGTACATGGCTAAGGGTAGCTTGGGGGAGTTATTGGAAGGAGCAAGTTGTAGTCTTGATTGGCATAAAAGGTTTAGGATTGCCCTTGGAACTGCACAAGGACTATCTTATTTGCACCATGATTGCAAGCCAAGGATAATCCACCGTGACATTAAGCCTAGTAACATACTCATTGACCATGAATTTGAAGCTCATGTTGGTGACTTTGGCTTGGCAAAGCTGATTGATGTGTCAACGTCTAAATCAGTGTCTGCAGTTGCAGGTTCTTATGGCTACATTGCCCCCGAGTATGCATATACCATGAAAGTGACTGAAAAATGTGACGTATACAGCTATGGGGTTGTCCTTTTGGAGCTATTGACCGGCAAGAAGGCTGTGCAACCAATAGATCAAGGTGGCGATCTTGTGACATGGGTGAAAAATCATATACAAAAGCATTCTTTGTCATTGGATATTTTTGATGCTCGATTGGGCTTGCATCTGTTGGACAAAATATATGTTGCTCAGGTATTTGATGTTTTGAAAATTGCTATGATCTGCACTGACACGTGTGCATTGAGGCGCTCGAGTATGCGCAAAGTTGTGTCAATGCTTGTAAGTTCGAATAACCGGGCAAAGCAGCTATCTTCGTTCTCTTCTCCATGTGAAGAAGAATGA 3138 0.4324 MLIFTLSTVLLYSSCSEGLNAEGEYLLDIKRRFYDKYKHLENWNSSDSTPCGWKGVRCSSSSSEPVVVSLDLHSMNLSGSLAPSIGGLVYLYHLNLSGNSLTGIIPKQIGNCSSLQLLGLNNNLLEGRIPAEIGRLSALTELYIHSNRLSGHFPVEIGNLSSLTIFTSYTNNLTGSLPSSFGNLKNLRRFRTGQNMISGSLPSEIAGCQSLEYLGLTQNQISGEIPKALGLLKNIKFLVLRENNFNGAIPKELGNCTNLEVLALYRNMLEGEIPKELGNLMLLKKLYLYHNELSGEIPREIGNLTLATEIDFSENLLIGRIPAELAKIPGLQLLHLFQNMLTGIIPNELTTLKNLTDVDLSINYLTGTIPVGFQDLLNLTTLQLFNNSLSGSIPRALGANSRLWVLDVSFNNLVGRIPVYLCQNSKLMLLNLGSNKLSGSIPYGITTCKSLVQLRLFANNIRGRFPSNLCRLVHLYALELDQNDFTGPVPAQIGNCISLQRLHLSNNRFFSEIPKEIGNLSQLVTFNVSSNYLHGRLPMELFNCKKLQRLDLSHNKFVGPFPAEIGTLSQLELLRLSENNFSEEIPVSIGKLVRLTELQMSGNSFSSTIPAELGALSALQIALNLSYNKLTGQIPFQLGKLNMLESLQLNNNNLSGEIPSTFVQLSSLLSCNFSNNDLSGPLPSLPLFQNSTFSCFFGNKGLCGGRLRPCPKKPSRSPNNLGKVLAIAATIVSAVSLVLIVAIIYFMIRPVDSVSPQQDIDASHSPPVSDMYFFPKEVLTFQDMVEATENFHSNFRAEISTLGKIRHRNIVKLHGFCTYHGSKIILYEYMAKGSLGELLEGASCSLDWHKRFRIALGTAQGLSYLHHDCKPRIIHRDIKPSNILIDHEFEAHVGDFGLAKLIDVSTSKSVSAVAGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKKAVQPIDQGGDLVTWVKNHIQKHSLSLDIFDARLGLHLLDKIYVAQVFDVLKIAMICTDTCALRRSSMRKVVSMLVSSNNRAKQLSSFSSPCEEE 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212165g00002 1045 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 18 178 - -
Stsc212165g00002 1045 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Stsc212165g00002 1045 ProSiteProfiles Protein kinase domain profile. 745 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212165g00002 1045 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 830 1042 - -
Stsc212165g00002 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 873 885 IPR008271 GO:0004672|GO:0006468
Stsc212165g00002 1045 Gene3D Transferase(Phosphotransferase) domain 1 831 1040 - -
Stsc212165g00002 1045 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 274 369 - -
Stsc212165g00002 1045 Gene3D Phosphorylase Kinase; domain 1 777 830 - -
Stsc212165g00002 1045 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 400 714 - -
Stsc212165g00002 1045 Pfam Leucine rich repeat 91 149 IPR001611 GO:0005515
Stsc212165g00002 1045 Pfam Leucine rich repeat 498 557 IPR001611 GO:0005515
Stsc212165g00002 1045 Pfam Leucine rich repeat 354 413 IPR001611 GO:0005515
Stsc212165g00002 1045 SUPERFAMILY RNI-like 69 422 - -
Stsc212165g00002 1045 Gene3D Ribonuclease Inhibitor 18 170 IPR032675 -
Stsc212165g00002 1045 SMART serkin_6 719 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212165g00002 1045 SUPERFAMILY L domain-like 361 712 - -
Stsc212165g00002 1045 SUPERFAMILY Protein kinase-like (PK-like) 789 1025 IPR011009 -
Stsc212165g00002 1045 Gene3D Ribonuclease Inhibitor 420 714 IPR032675 -
Stsc212165g00002 1045 Gene3D Ribonuclease Inhibitor 171 419 IPR032675 -
Stsc212165g00002 1045 SMART LRR_typ_2 352 375 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 280 304 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 136 160 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 376 400 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 88 112 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 641 665 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 232 256 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 496 520 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 568 591 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 184 208 IPR003591 -
Stsc212165g00002 1045 SMART LRR_typ_2 592 616 IPR003591 -
Stsc212165g00002 1045 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 331 1026 - -
Stsc212165g00002 1045 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 179 269 - -
Stsc212165g00002 1045 Pfam Protein kinase domain 786 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212165g00002 Stsc-Chr212165 15734 20224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212165g00002 44 1039 Receptor kinase-like Gene Family AT1G73080 37.140 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc212165g00002 Pkinase 1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212165g00002 - - vvo:131644205 1436.01