Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212164g00003 ATGGGTCCGAACCTAGAGTGCCGTATGTACGAGGCCAAGTACCCGGAGGTGGACATGGCGGTGATGATTCAGGTCAAGAACATCGCCGACATGGGCGCGTACGTTTCACTCCTCGAGTACAACAACATCGAGGGGATGATCCTCTTCTCCGAGCTCTCCCGTCGCCGGATTCGTAGCGTCAGCAGCCTCATCAAGGTTGGCCGAATCGAACCGGTAATGGTCCTCCGTGTCGACAAGGACAAGGGTTACATCGACCTTAGCAAGCGCCGCGTTTCTGAAGAGGATATTCAGGCATGTGAAGAGAGGTATAATAAGAGCAAGCTTGTTCACTCTATAATGCGCCACGTTGCTGAAACCCTAAACATTGATTTGGAGGAGCTGTATGTTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGGCATTCAAGATAATTGTGACTGATCCTGATTCAGTTCTAAATGCCCTCACCCGTGAAGTCAAGGAATCTGGCCCAGATGGGCAAGAGGTTACAAAGGTTGTTCCAGCTGTCACAGAAGAAGTGAAGGATGCTCTAGTAAAGAATATTAGAAGACGAATGACCCCTCAGCCCCTGAAAATTAGGGCAGACATTGAAATGAAATGTTTTCAATTTGATGGTGTTCTTCACATCAAGGAGGCCATGAGGATGGCTGAAGCTGCTGGAAATGATGACTGCCCTGTAAAAATTAAACTTGTTGCGCCCCCACTTTATGTGCTTACCACTCAGACTCTTGACAAGGAGCAAGGTATACTGGTCCTCAACAATGCTATTGCATCTTGCACCGAGTCAATAGAGGAGCACAAGGGTAAACTCGTGGTTAAGGAGGCACCTAGAGCGGTGAGTGAACGGGATGATAAATTGCTTGCCGAACACATGGCTAAGCTACGACAAGATAACGAAGAAGTCAGCGGCGATGAGGACAGCGAAGAGGAAGAGGACACAGGAATGGGCGATGTCGATCTGGATAACAACGGTACTGGAATCACAGAGTGA 1026 0.4834 MGPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKDKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNIDLEELYVHIGWPLYRKYGHAFEAFKIIVTDPDSVLNALTREVKESGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRMAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIASCTESIEEHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGDVDLDNNGTGITE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212164g00003 341 Gene3D EIF_2_alpha 202 324 IPR024055 -
Stsc212164g00003 341 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Stsc212164g00003 341 FunFam Eukaryotic translation initiation factor 2 subunit 1 202 324 - -
Stsc212164g00003 341 Pfam Eukaryotic translation initiation factor 2 alpha subunit 127 257 IPR011488 GO:0003723|GO:0003743
Stsc212164g00003 341 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Stsc212164g00003 341 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Stsc212164g00003 341 MobiDBLite consensus disorder prediction 293 341 - -
Stsc212164g00003 341 Coils Coil 303 323 - -
Stsc212164g00003 341 SMART S1_6 16 89 IPR022967 -
Stsc212164g00003 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 330 IPR011488 GO:0003723|GO:0003743
Stsc212164g00003 341 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 196 IPR024054 -
Stsc212164g00003 341 MobiDBLite consensus disorder prediction 293 312 - -
Stsc212164g00003 341 SUPERFAMILY eIF2alpha middle domain-like 91 196 IPR024054 -
Stsc212164g00003 341 FunFam Eukaryotic translation initiation factor 2 subunit alpha 92 196 - -
Stsc212164g00003 341 Gene3D - 3 91 IPR012340 -
Stsc212164g00003 341 SUPERFAMILY Nucleic acid-binding proteins 7 89 IPR012340 -
Stsc212164g00003 341 MobiDBLite consensus disorder prediction 313 329 - -
Stsc212164g00003 341 SUPERFAMILY eIF-2-alpha, C-terminal domain 200 316 IPR024055 -
Stsc212164g00003 341 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212164g00003 Stsc-Chr212164 17853 21693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212164g00003 2 341 Eukaryotic Initiation Factors Gene Family AT5G05470 80.938 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212164g00003 K03237 - gmx:100805950 608.601