Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212151g00005 ATGTACTCCATAATATACTATAACATTTTTCCAATCTACCGCAAATTTCAGTATGCATCAATATTCCGTAGAGGGGAAATGCAAGCGATTCCTTCATCTATACAGGGGGCAGCATCTATGACTACCACAGCATCACTTGATAATTCTTTATCTGACATGTACCGCTCTCCTCCAAGGCCGATGCCTTACGATGCAGACCCAAGGCATTTCCGCTCCCAGCATGATGGACTAGTTTCACGACGTGAGAAGGGTTCAAGTCATGCGAATGATGAGGCAGAACCTCTAAGAGGTGATCTAGATGAGGACGACTCGCAATCTTTAACTTCAAGCAACAAATGGCATGCCAGTGAGGATGGATCCAAAGAATACCGTTCTAAGTCTTCAGCAAGACTTTCATCAGCAAAACCTACGACTGGAGTTGGACTTGTCTATTCGTCATCAGAAGAAGAGGATTGCTGTCCAACATGTCTTGAAGAATATACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGCGACACCTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 612 0.433 MYSIIYYNIFPIYRKFQYASIFRRGEMQAIPSSIQGAASMTTTASLDNSLSDMYRSPPRPMPYDADPRHFRSQHDGLVSRREKGSSHANDEAEPLRGDLDEDDSQSLTSSNKWHASEDGSKEYRSKSSARLSSAKPTTGVGLVYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212151g00005 203 FunFam E3 ubiquitin-protein ligase At3g02290-like 130 200 - -
Stsc212151g00005 203 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 201 - -
Stsc212151g00005 203 MobiDBLite consensus disorder prediction 62 107 - -
Stsc212151g00005 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 198 IPR013083 -
Stsc212151g00005 203 SUPERFAMILY RING/U-box 148 200 - -
Stsc212151g00005 203 MobiDBLite consensus disorder prediction 48 139 - -
Stsc212151g00005 203 SMART ring_2 153 193 IPR001841 -
Stsc212151g00005 203 Pfam RING-H2 zinc finger domain 148 193 IPR024766 GO:0008270
Stsc212151g00005 203 ProSiteProfiles Zinc finger RING-type profile. 153 193 IPR001841 -
Stsc212151g00005 203 CDD RING-H2_AIRP1-like 149 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212151g00005 Stsc-Chr212151 18610 21049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212151g00005 18 202 C3H Transcription Factor Family AT5G15790 58.333 3.44e-72 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212151g00005 - - ahf:112797939 344.354