Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212151g00004 ATGGGTTCTGTTTGTTGTTGTTTGAGTGCTAATGATTTTGAAGATTATATGAATCCAAATAGTCCTGTATATAGGAATTGTGCGTGCCTCAGTTATGTCTTACAGAACTTTCTGAATGCGTATGCATCAATATTCCGTAGAGGGGAAATGCAAGCGATTCCTTCATCTATACAGGGGGCAGCATCTATGACTACCACAGCATCACTTGATAATTCTTTATCTGACATGTACCGCTCTCCTCCAAGGCCGATGCCTTACGATGCAGACCCAAGGCATTTCCGCTCCCAGCATGATGGACTAGTTTCACGACGTGAGAAGGGTTCAAGTCATGCGAATGATGAGGCAGAACCTCTAAGAGGTGATCTAGATGAGGACGACTCGCAATCTTTAACTTCAAGCAACAAATGGCATGCCAGTGAGGATGGATCCAAAGAATACCGTTCTAAGTCTTCAGCAAGACTTTCATCAGCAAAACCTACGACTGGAGTTGGACTTGTCTATTCGTCATCAGAAGAAGAGGATTGCTGTCCAACATGTCTTGAAGAATATACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGCGACACCTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 681 0.4302 MGSVCCCLSANDFEDYMNPNSPVYRNCACLSYVLQNFLNAYASIFRRGEMQAIPSSIQGAASMTTTASLDNSLSDMYRSPPRPMPYDADPRHFRSQHDGLVSRREKGSSHANDEAEPLRGDLDEDDSQSLTSSNKWHASEDGSKEYRSKSSARLSSAKPTTGVGLVYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212151g00004 226 Pfam RING-H2 zinc finger domain 171 216 IPR024766 GO:0008270
Stsc212151g00004 226 SUPERFAMILY RING/U-box 171 223 - -
Stsc212151g00004 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 221 IPR013083 -
Stsc212151g00004 226 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Stsc212151g00004 226 SMART ring_2 176 216 IPR001841 -
Stsc212151g00004 226 CDD RING-H2_AIRP1-like 172 220 - -
Stsc212151g00004 226 MobiDBLite consensus disorder prediction 85 130 - -
Stsc212151g00004 226 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 224 - -
Stsc212151g00004 226 FunFam E3 ubiquitin-protein ligase At3g02290-like 153 223 - -
Stsc212151g00004 226 MobiDBLite consensus disorder prediction 71 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212151g00004 Stsc-Chr212151 18610 22485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212151g00004 1 225 C3H Transcription Factor Family AT5G15790 56.897 6.30e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212151g00004 - - ahf:112797939 425.246