Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212149g00002 ATGTCAGACACGTCGCCTTCACCGGCGGCTTCTGGTGCCACTCAATCTCCACAACAACCGCCACCATCACCACCACCGGCTTCTGGAGCCACTCAACCTCCACAACAACCGCCATCACCACCGGCTTCTCCTGCGCCTAACACTTCAGCTTCCCCACCACCGTCGTCGTCAACGCCACCACCTTCGACTTCAACCACGCCGTCTCAGTCCTCGCCACCGACGACGACAACGCCATCTTCTCCTCCTCCCACCGTGCCGCCGCCGGTGCAACCGTCACCTCAGCCGTCAAAACCACCGCCTCCTGCTTCACCTCTTCCTTCGTCTGGAAACCCGCCGCCTTCAAGAGCACCTCCGCCAACCCCGCCGCAATCAGACCCTCCCCAATCGCCACCACCATCTCCGCCGCAGCCATCACCGGTTCCACCGAGAAGCTCTCCGCTACCATCAAACCCCCCTCCCACGCCTCCATCTAATCCTCCTAAGAGCACATCTCCGCCTCCAAAGTCACCGCCACCGGAGAATTCACCATCTCCTGTAACTTCTCCTCCACCAACAGCCGTGCCGCCACCACGAGGCTCCCCTCCGCCGCCACCCCCAAAAACCTCGCCTCCACCTCAACCATCGGTGCCGCCTCCGGTGAATTCCTCACCCCCAAGTCCCGCATCTGTGCCGCCACCAAGATCATCGCCACCGCCGGCATCAATGCCTCCTTCCCGGAACTCACCTCCTCCTTCGATTTCTCCCCCAACAACTGCACCTCCTCCTCCTCCTCCCACGGCACCTAGCACTCAACCAATACCTCCTTCGAATTCAACACCTCAGTCATCATCTTCCCCGCCACCCCCTAATCGGTTGGCGCCACCTCCGGCATCCATTCTCACCCCACCTCGAAACGGATCACAGACAGAGAATTCAGGTCCTACAGCTGGAGGAGGTGGTAATGGAATTGGTGCTGCTGCAATAGTGGCTATCAGTGCAGTGGCTGGAATTCTGTTGTTTGGGATCATTGGAGTTGCAATTTGGTGCATGATGAAGAGGAAAAAGAAAAAGGTGCTTAGCAACGGTGGTTATGTCATGCCCACAAATCCTGCCTCATCTCCTGATTCAGCTCCTCTTGTACAAAGCGGCTCTAGCAGTGATGTTTTGTATACACCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCGTGGTTTTCCTATGAAGAATTAATCAAGGCCACAGATGGTTTCTCAACCGAAAATCTCTTAGGCGAAGGTGGATTTGGTTCTGTGTATAAAGGATACCTGCCGGATGGGAGAGAAATAGCGGTCAAACAGCTGAAAATTGGCGGTGGTCAGGGAGAGAAAGAGTTCAAAGCTGAAGTTGAGATTATTAGTCGCATACATCATCGTCATCTGGTTTCGCTGGTTGGGTATTGCATTCAAGATACTAGAAGACTGCTTGTCTATGACTATGTCCCCAATAATACCCTTTATTTTCATCTACATGGGGAAAGTAGGCCGGTGTTAGAGTGGGCAAACCGTGTAAAAATTGCAGCTGGTGCAGCTCGAGGGATTGATTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATTAAGTCATCGAACATTCTTTTAGATTACAACTTTGAGGCTAAAGTCTCAGATTTTGGTCTAGCAAAATTAGCCCTTGATGCAAATACACATATTACCACACGTGTAATGGGAACTTTTGGGTACGTAGCCCCTGAATATGCATCCAGTGGCAAATTAACTGAAAAGTCTGATGTATATTCCTTTGGGGTTGTGCTCCTGGAGCTCATTACAGGGCGAAAGCCAGTAGATACATCTCAACCCGTGGGAGATGAGAGTTTAGTTGAATGGGCTCGACCGTTATTGAGTCATGTACTTGATAGTGGGGAGTTAGGGATTTTAACCGATCCAAGGCTAGAAAAGAACTACGTTGAAAGTGAAATGTTCTGTATGATCGAGGTTGCTGCATCTTGCGTTCGGCATTCGGCTGCAAAGAGGCCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGCTTCTGACCTAACAAATGGATTGCGAGTTGGAGAAAGTGAGGCTTTTAACTCTGGGCAGCTATCCGAAGAAATAAGATTGTTTAGGAGAATGGCATTTGGTGATCAAAATTATACCACTGACTTCTTTAGCCAGGATAGTTTAAATACGTGA 2214 0.5104 MSDTSPSPAASGATQSPQQPPPSPPPASGATQPPQQPPSPPASPAPNTSASPPPSSSTPPPSTSTTPSQSSPPTTTTPSSPPPTVPPPVQPSPQPSKPPPPASPLPSSGNPPPSRAPPPTPPQSDPPQSPPPSPPQPSPVPPRSSPLPSNPPPTPPSNPPKSTSPPPKSPPPENSPSPVTSPPPTAVPPPRGSPPPPPPKTSPPPQPSVPPPVNSSPPSPASVPPPRSSPPPASMPPSRNSPPPSISPPTTAPPPPPPTAPSTQPIPPSNSTPQSSSSPPPPNRLAPPPASILTPPRNGSQTENSGPTAGGGGNGIGAAAIVAISAVAGILLFGIIGVAIWCMMKRKKKKVLSNGGYVMPTNPASSPDSAPLVQSGSSSDVLYTPSDPGGLGHSRSWFSYEELIKATDGFSTENLLGEGGFGSVYKGYLPDGREIAVKQLKIGGGQGEKEFKAEVEIISRIHHRHLVSLVGYCIQDTRRLLVYDYVPNNTLYFHLHGESRPVLEWANRVKIAAGAARGIDYLHEDCNPRIIHRDIKSSNILLDYNFEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDTSQPVGDESLVEWARPLLSHVLDSGELGILTDPRLEKNYVESEMFCMIEVAASCVRHSAAKRPRMGQVVRAFDSLGASDLTNGLRVGESEAFNSGQLSEEIRLFRRMAFGDQNYTTDFFSQDSLNT 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212149g00002 737 Gene3D Transferase(Phosphotransferase) domain 1 486 695 - -
Stsc212149g00002 737 FunFam Proline-rich receptor-like protein kinase PERK8 383 485 - -
Stsc212149g00002 737 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
Stsc212149g00002 737 Pfam Protein kinase domain 411 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212149g00002 737 CDD STKc_IRAK 416 686 - -
Stsc212149g00002 737 Gene3D Phosphorylase Kinase; domain 1 390 485 - -
Stsc212149g00002 737 SMART serkin_6 410 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212149g00002 737 MobiDBLite consensus disorder prediction 15 67 - -
Stsc212149g00002 737 ProSiteProfiles Protein kinase domain profile. 410 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212149g00002 737 MobiDBLite consensus disorder prediction 1 310 - -
Stsc212149g00002 737 ProSitePatterns Protein kinases ATP-binding region signature. 416 438 IPR017441 GO:0005524
Stsc212149g00002 737 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 330 718 IPR047117 -
Stsc212149g00002 737 FunFam proline-rich receptor-like protein kinase PERK8 486 697 - -
Stsc212149g00002 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Stsc212149g00002 737 MobiDBLite consensus disorder prediction 74 294 - -
Stsc212149g00002 737 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212149g00002 Stsc-Chr212149 11585 15646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212149g00002 137 734 Trihelix Transcription Factor Family AT1G70460 47.484 5.50e-166 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc212149g00002 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212149g00002 - - vun:114173712 724.161