Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212148g00004 ATGGAGACAGATAACAACAGTGAGTCAAAGTCAAAGAAGATGGAGGACTATGAAGTGGTAGAGCAAATTGGAAGAGGAGCATTTGGTTCTGCCTTTCTGGTTCTTCACAAGTCTGAGAAGAAGAGGTATGTGCTGAAAAAGATTCGCCTGGCAAAGCAAACTGAGAAGTTCAAACGTACAGCTCATCAGGAGATGAATCTGATTGCAAAACTAAATAGCCCATATATTGTGGAATACAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGCATTGTAACTGGCTACTGTGAAGGAGGTGACATGGCTGAGTACATAAAGAAATCGCGTGGATCATTTTTCGCTGAGGAGAAGGTCTGCAAATGGCTCACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAACCGTGTAATCCATAGGGATCTTAAGTGTTCCAACATATTCCTCACAAAAGATAATAACATTCGGCTTGGTGACTTTGGTCTTGCGAAGCGGCTTAATCCAGAAGATCTTGCTTCCTCGATTGTTGGAACTCCGAATTATATGTGTCCTGAGCTTCTGGCTGATATACCTTATGGTTATAAATCTGATATGTGGTCGCTCGGTTGCTGCATGTTCGAGATTGCTGGGCATCAACCGGCATTTCGTGCTCCGGCTGCTGAATTGTTGCGGCATCCTCTTTTACAACCTTATGTTCTCCGCTGTCAAAATGCATCATCTAATTTTCTCCCAGTATACCCCATAGTTAACTCAAAGGATAAAACAAAAAGATCTAAAAAATCTAGCAGTGGCAAGGACCAGAGGGACAAAGAAGCAAGATCACCAAATCATTTGGAACGGATTCATCCAATTGAGGGAAATGGACATGTACAGCCAAGGAATCTTCCAAGTGATGGTGAGCTAACAGCCTCAACCAGCGCAGAAGACAACCTCGAGAACCGGTTGGTTGATCTTACAAGCTATATAGTAGAATCTTCTACTAGTATTAGTGGCTCCAAAGATGGATCAACAACATCCGAATCAACTATTTGTAGTGTATGCAAGGACCCTGACTTTAAAATTAGACCTGCAAAGGAGGCTCCAAATATTGAAATCACTTCAAATAGTACACAAGATTCAGTGCGTGAAGAACATGAATTTGCTGCTGAACTTCTTCAGAACTTAGAAGGGATTGACATAAATGCTGTTACAACACTAGTTGAAGATGCTTTTTCGGATGATGACGGTACTAATAATGCTGAAGCAGATAGAGAAGATGCCAAACTTGAAGACTCAAGGAAATCAACTTCTTCCAGTGCTGAAGCACAGAGAGAAGATGCCAAACTTGTGGACTCCAGAAAATCAACATCTTCCAGTGCAGGCACCAGCAGCACTGATAAAGATAAGTCCATTGACGAGGAAAGGTCGTCGCCAGTTCTGCATCCTGTTAAGGTTGAATGTGACACCGAATCTGGAAACAACTCGAAGGAAATCGAAAATCCTGATGCATCCAAAGCAGGCTCACAATTAAACTACTTATCATCTGAGAGTAATGATACACCTCCAGTCAAGGATGAAGAACAACCAAAACTTCACTTACTATGCTCCCCTCATAATGAAAATGCCAATGCAGTTGATGAGACAATGAATGGCATTTCATTAAGCACTTCAACAGTCAGCGACGAAACAACAAAGTCTGAGTTGGATAGTCCTTCCCAGCAAAGGGCTGAGGCTCTTGAATCTCTGCTTGAGTTATGTGCTCAGCTACTCAAGCAAGATAAGCTCGAAGAGCTTGCGGCTGTGCTAAGACCGTTCGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAGAGCCTTATATCAGCACAGAAGTTTAATCCTGAAACCTAG 1884 0.4246 METDNNSESKSKKMEDYEVVEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNSPYIVEYKDAWVEKEDHICIVTGYCEGGDMAEYIKKSRGSFFAEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNPEDLASSIVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPAAELLRHPLLQPYVLRCQNASSNFLPVYPIVNSKDKTKRSKKSSSGKDQRDKEARSPNHLERIHPIEGNGHVQPRNLPSDGELTASTSAEDNLENRLVDLTSYIVESSTSISGSKDGSTTSESTICSVCKDPDFKIRPAKEAPNIEITSNSTQDSVREEHEFAAELLQNLEGIDINAVTTLVEDAFSDDDGTNNAEADREDAKLEDSRKSTSSSAEAQREDAKLVDSRKSTSSSAGTSSTDKDKSIDEERSSPVLHPVKVECDTESGNNSKEIENPDASKAGSQLNYLSSESNDTPPVKDEEQPKLHLLCSPHNENANAVDETMNGISLSTSTVSDETTKSELDSPSQQRAEALESLLELCAQLLKQDKLEELAAVLRPFGKEAVSSRETAIWLTKSLISAQKFNPET 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212148g00004 627 MobiDBLite consensus disorder prediction 254 311 - -
Stsc212148g00004 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Stsc212148g00004 627 MobiDBLite consensus disorder prediction 405 525 - -
Stsc212148g00004 627 MobiDBLite consensus disorder prediction 490 513 - -
Stsc212148g00004 627 SUPERFAMILY Protein kinase-like (PK-like) 14 272 IPR011009 -
Stsc212148g00004 627 Pfam Protein kinase domain 17 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212148g00004 627 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Stsc212148g00004 627 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Stsc212148g00004 627 FunFam Serine/threonine-protein kinase Nek6 1 96 - -
Stsc212148g00004 627 SMART serkin_6 17 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212148g00004 627 MobiDBLite consensus disorder prediction 411 446 - -
Stsc212148g00004 627 MobiDBLite consensus disorder prediction 254 287 - -
Stsc212148g00004 627 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 14 577 - -
Stsc212148g00004 627 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Stsc212148g00004 627 ProSiteProfiles Protein kinase domain profile. 17 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212148g00004 627 MobiDBLite consensus disorder prediction 460 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212148g00004 Stsc-Chr212148 16315 20475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212148g00004 10 225 MAP Kinase Kinase Kinase AT3G13530 34.091 4.25e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc212148g00004 Pkinase 1.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212148g00004 K08857 - gmx:100793379 848.966