Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212148g00003 ATGGCGAAGAAGAACAAAGCTAGGGTTCCCGACGATGAACAACAAATCGATTCCGAACCTAACAGCAACCATCAGACCCTCTACGAGGTTCTTGGTGTGGAAAGAACTGCCTCTCAGCAGGAAATAAAGAAGGCATACTACAAGCTCGCATTGCGGCTTCATCCCGACAAGAACCCTGGCGATGAGGAGGCTAAAGAGAAGTTTCAGCAACTGCAAACAGTAATCTCAATTCTTGGGGATGAAGAGAAACGAGCCGTTTATGATCAGACTGGTTGTGTTGATGATGCGGACCTTTCTGGTGATGCTGTTCAGAATCTTAGTGAGTTTTTCAGAACAATGTATAAGCAGGTAACTGAAGCTGATATTGAGGAGTTTGAAGCTAACTATAGGGGATCTGAATCAGAGAAAAATGATTTAATTGATTTGTACAAGAAGTGCAAGGGTAATATGGACAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAATTTGATTCACATCGATTCAAGGATATACTTGACGAGGCTATTGCTGCTGGAGAACTAAAGGAAACAAAAGCCTACGAAAAATGGGCGAAGAAAGTATCTGAAATCAAACCACCAACTAGTCCTTTAAAGAGGAGGGCAGAGTCCAGTAGTAATAAGCCAGAAACAGATCTATATGCAATGATAGCACAACGTCAAAATCAGAGGAAAGATAGGTTTGATTCAATGTTCTCATCGCTGGCTTCAAAATATGGTGGAGGTGATATGCCTGAGCCCACTGAAGAAGAATTTGAAGCTGCACAGAGAAAGTTGGATAGTGGAAGATCCTCAAAAAAGGCAAAGCAATCAAAGCGGAAGTAA 846 0.4173 MAKKNKARVPDDEQQIDSEPNSNHQTLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQTVISILGDEEKRAVYDQTGCVDDADLSGDAVQNLSEFFRTMYKQVTEADIEEFEANYRGSESEKNDLIDLYKKCKGNMDRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKETKAYEKWAKKVSEIKPPTSPLKRRAESSSNKPETDLYAMIAQRQNQRKDRFDSMFSSLASKYGGGDMPEPTEEEFEAAQRKLDSGRSSKKAKQSKRK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212148g00003 281 CDD DnaJ 26 80 IPR001623 -
Stsc212148g00003 281 SUPERFAMILY Chaperone J-domain 23 106 IPR036869 -
Stsc212148g00003 281 Pfam DnaJ domain 27 88 IPR001623 -
Stsc212148g00003 281 PRINTS DnaJ domain signature 83 102 IPR001623 -
Stsc212148g00003 281 PRINTS DnaJ domain signature 63 83 IPR001623 -
Stsc212148g00003 281 PRINTS DnaJ domain signature 46 61 IPR001623 -
Stsc212148g00003 281 PRINTS DnaJ domain signature 28 46 IPR001623 -
Stsc212148g00003 281 MobiDBLite consensus disorder prediction 257 273 - -
Stsc212148g00003 281 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Stsc212148g00003 281 Coils Coil 115 142 - -
Stsc212148g00003 281 Gene3D DnaJ domain 11 123 IPR036869 -
Stsc212148g00003 281 MobiDBLite consensus disorder prediction 199 214 - -
Stsc212148g00003 281 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 15 277 IPR042977 -
Stsc212148g00003 281 SMART dnaj_3 25 83 IPR001623 -
Stsc212148g00003 281 MobiDBLite consensus disorder prediction 199 281 - -
Stsc212148g00003 281 MobiDBLite consensus disorder prediction 1 18 - -
Stsc212148g00003 281 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212148g00003 Stsc-Chr212148 11215 13633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212148g00003 18 88 C2H2 Transcription Factor Family AT1G74250 38.158 4.72e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212148g00003 K09529 - gmx:100781463 446.047