Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212148g00002 ATGGGAAATGGTGGCATTTTTGGAAGAGTTTATGTTATGAACTTACCAAGTGGTGAACTTGTTGCTGTCAAGAAGCTAGCCAATTTCAGGAATCAGTCCTCAAAGAGTTTGAAATCTGAGGTCAAGACTCTGGCAAAGATTAGGCACAAGAACATTGTTAAGATTCTGGGGTTCTGCCACTCTGATGAGGCAGTTTTTCTTATATACGAGTTCTTGAATGAAGGGAGCTTAAGGGATTTGATTTTGCGGCCGGATTTTAAGCTGGAATGGAGTGTTAGGTTGAAGATTGCCATTGGAGTTGCTCAGGGACTTGCATATCTTCACAAGGACTACTCGCCGCGATTGCTTCACCGGAATGTCAAGTCGAGTAACATTCTTTTGGATGCAAACTTTGAGCCAAAGCTCACAGATTTCGCTCTTGATAGAGTTCTTGGAGAAGCTGCATTTCAGTCTACTTTGGATTCTGAAGCACCATCTTCCTGCTACATTGCACCAGAATATGGTTACAGCAAGAAAGCCACTGAACAATTAGATGTGTATAGCTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGAAGACAAGCTGAGAAAGCAGATTCAAGCGAGTCCATTATTGACATAGTGAAGTGGGTTAGAAGGAAAGTGAACATTGCTAATGGGGTGCAACAAATTCTTGACCAAAGAATATCATCATCAAGCACATGCCACCAAGAAATGGTTAGAGCCTTAGACATTGCACTCCGTTGCACCTCAGTGGTTCCTGAGAAGAGGCCATCAATGTTGGAAGTTGTGAAGTCTCTTCAGTCCCTTGAGTTAAGGACTTGCATTTCAGATTTGCAAGATCAACCACCAAATGAGGAACCCTCCAATATTCCAATCTGA 882 0.4252 MGNGGIFGRVYVMNLPSGELVAVKKLANFRNQSSKSLKSEVKTLAKIRHKNIVKILGFCHSDEAVFLIYEFLNEGSLRDLILRPDFKLEWSVRLKIAIGVAQGLAYLHKDYSPRLLHRNVKSSNILLDANFEPKLTDFALDRVLGEAAFQSTLDSEAPSSCYIAPEYGYSKKATEQLDVYSFGVVLLELVSGRQAEKADSSESIIDIVKWVRRKVNIANGVQQILDQRISSSSTCHQEMVRALDIALRCTSVVPEKRPSMLEVVKSLQSLELRTCISDLQDQPPNEEPSNIPI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212148g00002 293 CDD STKc_IRAK 1 270 - -
Stsc212148g00002 293 Pfam Protein tyrosine and serine/threonine kinase 5 267 IPR001245 GO:0004672|GO:0006468
Stsc212148g00002 293 PIRSF ILK 6 278 - -
Stsc212148g00002 293 Gene3D Phosphorylase Kinase; domain 1 1 72 - -
Stsc212148g00002 293 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 277 - -
Stsc212148g00002 293 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 1 71 - -
Stsc212148g00002 293 SUPERFAMILY Protein kinase-like (PK-like) 5 277 IPR011009 -
Stsc212148g00002 293 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212148g00002 293 Gene3D Transferase(Phosphotransferase) domain 1 73 282 - -
Stsc212148g00002 293 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 72 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212148g00002 Stsc-Chr212148 2980 4352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212148g00002 10 270 Receptor kinase-like Gene Family AT5G06940 61.977 9.73e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc212148g00002 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212148g00002 - - adu:107492922 547.354