Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212145g00001 ATGGCTTCACTAACCTGGGCTGTGCTGAATTCAGAGACCGATAAGATTGCTTTGCTTGGTTTGAAAGACAAGCTTACCAATGGCGATCCTCATGCTCTACCATCATGGAATCACTCTCTCCATTTCTGTCAATGGGAGGGCGTTACATGCAGTCGACACATGAGAGTCTCAGCCTTGCAGCTACAAAACCAATACTGGGGTGATATTCTCGCGCCATCCTTGGGAAATCTGACATTCCTCAAGGAGATCAATCTTACCAGCATCAACTTGCATGGTGAGATTCCAAGAGAAGTTGGTCATTTGAAGAGGTTGCAGATTCTTGACTTGAGGCAAAATAATCTTCATGGTGAGATTCCTATGGAGATGATAAATTGTTCAAGCCTTGAGGTAATTATATTGCAGCAAAATAATGTAACTGGCAAAGTTCCTTCATGGTTTGGTTCTATGATACAACTTACTCATCTGCGGCTTGGAGCCAACCATTTTGTTGGTAGTATCCCACCTTCTTTGGGAAATCTTTCATCGCTTGAATTCTTGTCACTTGTATACAATCATTTGGAAGGAAGCATAACTCCATCTTTAGGTAGGATATCAAATGTGAAATTTTTGTATTTTGGTGTAAATAATTTTTCTGGCCAAGTCCCTCCTTCACTTTACAACCTTTCAAATATTCAAGATCTTTCTTTAGCTGAAAACCAGTTAGTGGATACTCTCCACTCGAATTTACCTATGGTGTTTCCCAATCTTCAGTTTCTTCGATGTGGAGGGAACCGATTCACTGGTACTTTCCCATCTTCAATATCCAACCTTTCTCAACTCCAACTTTTTGAAATAGCCGGAAATGATTTTCATGGGCCAATACCTCCTACTCTAGGGAGTTTACACAAACTTGAGTTTTTTAATGTCGCTCACAATAGATTCGGAAGTCGAAGGGCTGATGATTTGGATTTCCTTTCCTCGTTACAGAATTGTACTCAATTGCAAATTGTAGGCATTGATAACAATTATTTAGGTGGTATATTGACTGATCTCATAGGCAACTTATCAAGCAATCTCGTTTGGCTTTCTATGGGGTCCAATCAAATATCTGGAAGGATACCTGATGGAATTGGAAAACTAATCAACCTAACAACGCTTGGTATGGAGGGAAATTCCCTTGAGGGAACAATTCCATATTCAATTGGAAAGCTCAAGAATCTGGTATGGTTGACCTTGGGGGGAAATAACTTGTTTGGCAACATTCCTCGTGTCATTGGTAACCTTACTATGTTGTCTGAAGTTGCTCTGGATTCAAATAAATTTGAAGGAGTCATTCCTTTTACACTTGGAAATTGCACCAAGATGGAGAGATTTTATGCTAATAATAACAACTTGAGTGGTAATATACCCATTCAAACATTTGGCTACCAACAAGGTTTAATAGAGTTGTCCTTACATTCCAACTCATTTACTGGCCCCATTCCTTCTGATCTTGGTAACTTGAACCATCTTTCCTCATTGAATTTACAAGAAAACAAGCAGACCAGTGAGATTCCCATAGGACTTAGTGCTTGCACTGCGTTAACAGAGCTCACACTAGGAAGAAACTCGTTTCATAGAAATATACCTTCATTCTTGGGATCCCTACTATCCCTTGAAATCTTAGACCTTTCTAAAAACAACTTCTCAAGCACAATTCCACAAGAACTTGTGAATCTCACCTTGTTGAGTTCTTTGAATTTATCTTTCAACCATCTCTCCGGTGAAGTCCCGGTAGGAGGGGTATTTAATAATGTCACAGCAATATCGCTCACCGGAAACAAAGATCTTTGTGGAGGGATTCCTCAATTGAATTTTGTTCCATGCCCTGTGTCACCTTTACAGAAGAAACACAAGAGATCGATTAGGAAGAGAGTCATCCTCAGCGTTGCATTTGGAGGGGTTCTAATCACTTTTGTGACTTTTATCAGTATCTATCTACTCAAGAAAAAGGCAAAGAAGTTATCCATTACATCCCTAGCTTTGCATTATGGCTATGTGAAGGTTTCCTATGGAGAGCTACATCAAGCAACCAATGGATTTTCTTCATCCAATTTAGTTGGTACAGGAAACTTTGGTACTGTGTATAGAGGAACACTTGTCCAATTTGAGAGACCTGTAGCTGTAAAGGTGTTGAATCTTCAAACACGTGGGGCATCGAAGAGTTTCGTGGCCGAATGCAAAGCTCTAGGAAAAATCAAGCACAAAAACCTTGTCAACATACTGACTTGTTGTTCAAGTGTTGATTACAAAGGGAATGATTTCAAGGCCATAGTGTTCGAGCTCATGTCAAATGGGAGTCTAGAAACCTTGTTGCACAACAACACTGAAGATAGCGAGTCCACGAATCTGTGTCTCAACCTTATACAAAGGCCAAGCAATGTTCTACTTGATGATGACATAGTTGCCCACTTGGGAGACTTTGGATTAGCTAGACTCGTTCATTCTAGCAGTAATCAAGCTAGCTCCTCTGCAATTAAGGGAACCATTGGATATATTCCACCAGAATATGGAGCAGGCAGCTCAGTGTCAATAGAGGGAGACATGTATAGCTATGGAATTCTTCTTCTGGAGATGATCACTGGTAAGAAGCCAACTGATAGTATGTTTGGTGAAGGTGTAAGCCTACACATGTTCGGTAACATGGCAATTCTAGAAAGAATCACTGAGATTGTTGATTCAAGATTGCTCATTCCATGGTCAATTGATAAACAAGAAAGAAGGGTCACAAGACAGCAAAATATGGAAGAGTGTGTAGCATCCTTTGCTAGGATTGGAGTTGCATGTTCTCAAGAGATTCCTAATCAACGAATGAGCATAAAAGATGTCATAACTGAATTGCATGCAATCAAACAAAAGCTATCCTGTTAA 2889 0.3994 MASLTWAVLNSETDKIALLGLKDKLTNGDPHALPSWNHSLHFCQWEGVTCSRHMRVSALQLQNQYWGDILAPSLGNLTFLKEINLTSINLHGEIPREVGHLKRLQILDLRQNNLHGEIPMEMINCSSLEVIILQQNNVTGKVPSWFGSMIQLTHLRLGANHFVGSIPPSLGNLSSLEFLSLVYNHLEGSITPSLGRISNVKFLYFGVNNFSGQVPPSLYNLSNIQDLSLAENQLVDTLHSNLPMVFPNLQFLRCGGNRFTGTFPSSISNLSQLQLFEIAGNDFHGPIPPTLGSLHKLEFFNVAHNRFGSRRADDLDFLSSLQNCTQLQIVGIDNNYLGGILTDLIGNLSSNLVWLSMGSNQISGRIPDGIGKLINLTTLGMEGNSLEGTIPYSIGKLKNLVWLTLGGNNLFGNIPRVIGNLTMLSEVALDSNKFEGVIPFTLGNCTKMERFYANNNNLSGNIPIQTFGYQQGLIELSLHSNSFTGPIPSDLGNLNHLSSLNLQENKQTSEIPIGLSACTALTELTLGRNSFHRNIPSFLGSLLSLEILDLSKNNFSSTIPQELVNLTLLSSLNLSFNHLSGEVPVGGVFNNVTAISLTGNKDLCGGIPQLNFVPCPVSPLQKKHKRSIRKRVILSVAFGGVLITFVTFISIYLLKKKAKKLSITSLALHYGYVKVSYGELHQATNGFSSSNLVGTGNFGTVYRGTLVQFERPVAVKVLNLQTRGASKSFVAECKALGKIKHKNLVNILTCCSSVDYKGNDFKAIVFELMSNGSLETLLHNNTEDSESTNLCLNLIQRPSNVLLDDDIVAHLGDFGLARLVHSSSNQASSSAIKGTIGYIPPEYGAGSSVSIEGDMYSYGILLLEMITGKKPTDSMFGEGVSLHMFGNMAILERITEIVDSRLLIPWSIDKQERRVTRQQNMEECVASFARIGVACSQEIPNQRMSIKDVITELHAIKQKLSC 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212145g00001 962 FunFam LRR receptor-like serine/threonine-protein kinase EFR 315 621 - -
Stsc212145g00001 962 Pfam Leucine rich repeat N-terminal domain 12 51 IPR013210 -
Stsc212145g00001 962 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 49 314 - -
Stsc212145g00001 962 SMART LRR_typ_2 101 125 IPR003591 -
Stsc212145g00001 962 SMART LRR_typ_2 566 591 IPR003591 -
Stsc212145g00001 962 SMART LRR_typ_2 149 173 IPR003591 -
Stsc212145g00001 962 SMART LRR_typ_2 221 245 IPR003591 -
Stsc212145g00001 962 SMART LRR_typ_2 397 421 IPR003591 -
Stsc212145g00001 962 SMART LRR_typ_2 542 565 IPR003591 -
Stsc212145g00001 962 SMART LRR_typ_2 494 518 IPR003591 -
Stsc212145g00001 962 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 280 955 - -
Stsc212145g00001 962 Pfam Protein kinase domain 689 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212145g00001 962 SUPERFAMILY L domain-like 350 605 - -
Stsc212145g00001 962 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Stsc212145g00001 962 Gene3D Ribonuclease Inhibitor 10 168 IPR032675 -
Stsc212145g00001 962 Gene3D Ribonuclease Inhibitor 319 613 IPR032675 -
Stsc212145g00001 962 SUPERFAMILY L domain-like 38 349 - -
Stsc212145g00001 962 ProSiteProfiles Protein kinase domain profile. 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212145g00001 962 FunFam LRR receptor-like serine/threonine-protein kinase EFR 657 768 - -
Stsc212145g00001 962 Pfam Leucine rich repeat 520 579 IPR001611 GO:0005515
Stsc212145g00001 962 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Stsc212145g00001 962 Gene3D Phosphorylase Kinase; domain 1 649 767 - -
Stsc212145g00001 962 SUPERFAMILY Protein kinase-like (PK-like) 669 956 IPR011009 -
Stsc212145g00001 962 Gene3D Ribonuclease Inhibitor 169 318 IPR032675 -
Stsc212145g00001 962 Gene3D Transferase(Phosphotransferase) domain 1 769 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212145g00001 Stsc-Chr212145 17564 20834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212145g00001 12 960 Receptor kinase-like Gene Family AT3G47570 42.222 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc212145g00001 Pkinase 3.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212145g00001 - - ahf:112766919 1403.27