Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212144g00005 ATGGCTTCTTCGTCAAAGATGAAAGGAATTGCAACAACAACAACAACGCGTAGAAGGAAGATTGAGATCAAGAAAGTAGAGCAAAGCAACAAGCGCCACGTCACCTTCTCCAAAAGAAAATTAGGGCTTTTCAACAAAGTCACGGAGCTTTCCATCCTCTGCCAGGCGGAAACCGTTTTGATCGTCTCCTCGCAAAACGGAAAGCTTTATGTCTGCGGCTATCCTTCGCCGGACGCCGTGATCCGCCGCTTCCTCAACGGAGGAGATTCCGCTTCCGCTTCCGATTCCGCTCCTAAGGCCTTGAAGAAGAAGCAAAACGAGAGCTTGGAAGCTCTAAGAGCACAGTATGAGTCGGCTCAAGAAGCTCTCAGCGAAGAGAAGAAGCGGCTCGAAGAGGCCGAGAAGGCGAGCAAGAACAGCAACGAGGGCTGCGGCGGCGGCTTAGGGTTTTCGAATCAGTGGTGGGAGAATCCAATTGAGGAGATGGATCTGGAGGAGCTTGTCAAGTTCAAAGAATCATTGGAACAGTTGAAGATGAATCTGGTTGTAACGGCTGAACAGAAGATCATGTTGAAACAAATGATGCCGCCATTGCCATCCCTTGCTACTACTCCAACGCAAACTAGGTTTTCCAATTTTTCTTCAATCTTGAACGATAATGGTGGATTCATCAGCGCTTTTCATCATCAACCACAGCAGCAGCAATTATGTTGGAATAATTGGAGCAATAACAGCATCTTCATCAATAATGGAATTGCTAGTAGTAGCAGCAGTAACAATCTCAATTCTTTAGGAACATGGGATTTTGGGAACAATGCTATCATTGCTGCTTCTGCTGCTAATGGTAATGGTAATAGTGGTTCTTTTCTTCCTAATAACATTGGTTTTGGCAGTTATTATTAA 903 0.454 MASSSKMKGIATTTTTRRRKIEIKKVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETVLIVSSQNGKLYVCGYPSPDAVIRRFLNGGDSASASDSAPKALKKKQNESLEALRAQYESAQEALSEEKKRLEEAEKASKNSNEGCGGGLGFSNQWWENPIEEMDLEELVKFKESLEQLKMNLVVTAEQKIMLKQMMPPLPSLATTPTQTRFSNFSSILNDNGGFISAFHHQPQQQQLCWNNWSNNSIFINNGIASSSSSNNLNSLGTWDFGNNAIIAASAANGNGNSGSFLPNNIGFGSYY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212144g00005 300 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Stsc212144g00005 300 SUPERFAMILY SRF-like 17 86 IPR036879 GO:0003677|GO:0046983
Stsc212144g00005 300 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Stsc212144g00005 300 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Stsc212144g00005 300 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Stsc212144g00005 300 PANTHER MADS BOX PROTEIN 18 181 - -
Stsc212144g00005 300 Gene3D - 29 108 IPR036879 GO:0003677|GO:0046983
Stsc212144g00005 300 Coils Coil 99 143 - -
Stsc212144g00005 300 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Stsc212144g00005 300 MobiDBLite consensus disorder prediction 123 138 - -
Stsc212144g00005 300 MobiDBLite consensus disorder prediction 123 144 - -
Stsc212144g00005 300 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212144g00005 Stsc-Chr212144 19328 20230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212144g00005 18 196 Type I MADS-box Gene Family AT5G60440 34.078 8.38e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc212144g00005 SRF-TF 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212144g00005 - - ahf:112729126 308.916