Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212144g00001 ATGGAGGGAAGTAGTTCTTCTTCTTCTGATGAAGAAGATTCACTACTCTTAGTTGATGATTTCTACTTTTCAGCCCTCTTTGATTCTGAAGAACTGTTCCCAATCAATGATGAGAAATATGCAGAGGAGTTACACTTGCAAGAAGCTTTGTACTCCTCTGCTATAAGCCTCAAGAGAAAACTCAAAGAGGTTGTTTTTGTTGTTGGTGAATCTTCTTCTACTACTCATCAATCTCATGATTATCATCCAGTCTTGTGTGCTATTTGCATGGATTCAAAGCCAGTTCAAGAGATTTTCAGCAACCAAAACTGCAATCACTCCTTCTGTGTTGACTGCATTGCAAGATATGTAGCTGCAAAGATTCAAGAGAATATATCACAAGTGAAGTGTCCTGAACCAAACTGCATAGGAATCTTGGAGCCTCAGAATTGCAGGCCAATAATTCCAAAACAAGTGTTTGAAAGATGGGAGAATGCGCTCTGTGAGAATCTTGTTCTTGCAACATCTGAGAGATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGATGGTGAATGATGATGGGGATGGGGATGAAGTTCTGACTTCTTCTGAGTGTCCACATTGTCACAGATTGTTCTGTGCACAGTGTAAGGTTCCATGGCATGATGGGGTTGAATGTGGTGAGTTTATGAGTTTGAATGAAGATGAAAGAGACAAGGAAGATCTTTTGGTGATGAATCTTGCAAAGGCTAAGAGATGGAGAAGGTGTTCTAAATGCAGAATTTATGTTGAAAAAAATGAGGGGTGTTCTCACATTTCTTGCAGGTGTGGTCATCACTTCTGCTATGCTTGTGGAGGGGCATGGAATCACAACCATGGTTGTCCATAG 870 0.4046 MEGSSSSSSDEEDSLLLVDDFYFSALFDSEELFPINDEKYAEELHLQEALYSSAISLKRKLKEVVFVVGESSSTTHQSHDYHPVLCAICMDSKPVQEIFSNQNCNHSFCVDCIARYVAAKIQENISQVKCPEPNCIGILEPQNCRPIIPKQVFERWENALCENLVLATSERFYCPFKDCSAMMVNDDGDGDEVLTSSECPHCHRLFCAQCKVPWHDGVECGEFMSLNEDERDKEDLLVMNLAKAKRWRRCSKCRIYVEKNEGCSHISCRCGHHFCYACGGAWNHNHGCP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212144g00001 289 Gene3D - 217 289 - -
Stsc212144g00001 289 SMART ibrneu5 154 220 IPR002867 GO:0008270
Stsc212144g00001 289 SMART ibrneu5 230 288 IPR002867 GO:0008270
Stsc212144g00001 289 CDD Rcat_RBR_unk 246 282 - -
Stsc212144g00001 289 ProSiteProfiles Zinc finger RING-type profile. 86 131 IPR001841 -
Stsc212144g00001 289 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 282 IPR031127 GO:0004842|GO:0016567
Stsc212144g00001 289 SUPERFAMILY RING/U-box 231 288 - -
Stsc212144g00001 289 ProSitePatterns Zinc finger RING-type signature. 104 113 IPR017907 -
Stsc212144g00001 289 SUPERFAMILY RING/U-box 83 163 - -
Stsc212144g00001 289 ProSiteProfiles TRIAD supradomain profile. 82 289 IPR044066 -
Stsc212144g00001 289 FunFam RBR-type E3 ubiquitin transferase 82 167 - -
Stsc212144g00001 289 SUPERFAMILY RING/U-box 154 223 - -
Stsc212144g00001 289 CDD BRcat_RBR_unk 169 223 - -
Stsc212144g00001 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 169 IPR013083 -
Stsc212144g00001 289 Pfam IBR domain, a half RING-finger domain 154 220 IPR002867 GO:0008270
Stsc212144g00001 289 Pfam IBR domain, a half RING-finger domain 241 288 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212144g00001 Stsc-Chr212144 4973 6085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212144g00001 86 280 C3H Transcription Factor Family AT2G19610 28.019 7.56e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212144g00001 K11975 - qsa:O6P43_018461 372.089