Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212139g00001 ATGGACTTGAAATCGAATCACACCCCTGTTCTTGCTGATGCTGCACCCATAACAAAGTCAAGGCTGGGTGTGCATTCGAGTTTATTGCCTTACTCCCCAACTGGGGCTTCCTTTCCACATGGTATGCTATTGACTATCCCAAGGAAGAAAACTGGTCTTCTTGAAGATGTTCGTTCTAGTTGTTGGTTGGATGCCATGAAATCATCTTCTCCTCCACCCAGGAAAATAACAAAGGATGTTAATCATGGCTTTGCGTCACACGAATCTGATGCTGCTTATTTTAACTGGCTGCTAAAGTATCCTTCAGCACTTACATCTTTTGAGCAAATTACAAACTATGCAAGAGGCAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCGATTGTCGATAATCCTGACTGTGCTTTCATGTCTGACAATATGCGTGCTGCTGTTAAAAAGGTGGCTGAATATTTCCCTACTGCTATAATCAGTGGAAGAAGTCGTGACAAGGTATATGAATTTATAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGTATGGACATCATTGGTCCTGTCAGGCAGTCTGTACCTGATAACCACCCTAATTGCACCATTAGATCTACTGACAAGCAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAGTTCTTGCCCATGATTGATGAGGTATTCGAGTCTCTTGTTGAGAGTACAAAACATATTAAAGGAGCAAAAGTTGAAAACAATAAATTTTGTGTGTCTGTACATTACCGCAATGTAGATCTTAAGAGTTGGGATTTGGTGGGACAGATTGTCCATGATATTCTGAAGGGCTATCCACGTTTGCGACTAACTCATGGGCGTAAGGTCTTAGAGGTCCGACCAGTGATTGACTGGGATAAGGGAAAAGCGGTCACGTTTTTGCTCGAGTCACTTGGGCTCAGCAATTGTGATGATGTGCTTCCTATATATATTGGAGATGACAGAACAGATGAAGATGCATTTAAGGTTCTGAGAGAAGGAAGTAAAGGTTATGGGATCTTGGTGTCTTCAGCCCCAAAGGAAAGCAATGCAGTTTACTCTCTCCGTGATCCATCAGAGGTGATGGAGTTTCTCAAGTCTCTTGTGGTATGGAAGTCAAGCCCCCTAAAAAGCCTTATATAG 1167 0.4216 MDLKSNHTPVLADAAPITKSRLGVHSSLLPYSPTGASFPHGMLLTIPRKKTGLLEDVRSSCWLDAMKSSSPPPRKITKDVNHGFASHESDAAYFNWLLKYPSALTSFEQITNYARGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFIGLTELYYAGSHGMDIIGPVRQSVPDNHPNCTIRSTDKQGKEVNLFQPAAEFLPMIDEVFESLVESTKHIKGAKVENNKFCVSVHYRNVDLKSWDLVGQIVHDILKGYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGSKGYGILVSSAPKESNAVYSLRDPSEVMEFLKSLVVWKSSPLKSLI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212139g00001 388 Gene3D - 229 385 IPR023214 -
Stsc212139g00001 388 Gene3D - 119 206 IPR023214 -
Stsc212139g00001 388 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 382 IPR044651 GO:0004805|GO:0005992
Stsc212139g00001 388 NCBIfam HAD-IIB family hydrolase 121 341 IPR006379 -
Stsc212139g00001 388 SUPERFAMILY HAD-like 120 378 IPR036412 -
Stsc212139g00001 388 NCBIfam trehalose-phosphatase 116 377 IPR003337 GO:0003824|GO:0005992
Stsc212139g00001 388 CDD HAD_TPP 120 371 - -
Stsc212139g00001 388 Pfam Trehalose-phosphatase 122 367 IPR003337 GO:0003824|GO:0005992
Stsc212139g00001 388 FunFam Trehalose 6-phosphate phosphatase 119 208 - -
Stsc212139g00001 388 FunFam Trehalose 6-phosphate phosphatase 227 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212139g00001 Stsc-Chr212139 9116 15043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212139g00001 113 376 Trehalose Biosynthesis Gene Families AT1G70290 25.442 2.70e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212139g00001 K01087 - gmx:100819495 695.656