Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212130g00003 ATGGGTCTCTGCGTTTCAAAGGCTCCTCCCGAGTCTCTTTCACCTTCTCACAACAACAATTCCAAACAAGAATCAGAAGAAGCAGTAGCATCATCCAACGGTTACAACTCGAGCTCCGTCAATGGCGGAGTCCGTAGTGATGCTGGGAAGAAGACCCCATTCTTCCCGTTCTACAGCCCTAGTCCAGCTCACTACCTCTTCTCGAAGAAATCTCCGGCGAGATCTCCGGTGAGGACGGGGTCGGAGTCGACGCCGCGGCGATTCTTCAAGCGGCCTTTCCCGCCGCCGTCGCCAGCGAAGCACATAAAGGCGGTGCTGGCACGGCGGCAGGGGTCAGTGAAGCCTAACTCATCGAGCGTAGCGGAGGGAAGCGTGGGCGGCGGCGGCGAGGAGGGCGTGGCGGTTGCGCTGGACAAGAGCTTCGGATTCTCAAAGCATTTCAAGAACAAGTTGGAAGTTGGGAGTGAGGTTGGGAGAGGGCATTTTGGGTATACTTGTTCTGCTATATTCAGGAAGGGAGAACTCAAGGGTCACCATGTTGCTGTCAAGGTTATCCCAAAAGCTAAGATGACCACTGCAATTGCTATTGAGGATGTGAGAAGGGAAGTGAAAATATTGAGAGCTTTGACAGGACATAAGAATCTTGTAAAGTTCTATGATGCATATGAAGATCAAGATAATGTCTATATAGTAATGGAATTGTGTGAAGGAGGTGAGCTCTTGGATAGAATACTATCAAGAGGTGGGAAATACACAGAAGAAGATGCGAAAGCTGTCCTGGTGCAAATACTGAACGTTGTTGCATTTTGCCATCTGCAGGGTGTTGTGCACCGTGATCTTAAACCTGAGAACTTCTTGTTTGCATCGAAAGATGAGAACTCAGAGTTGAAGGCCATAGACTTTGGGTTGTCGGATTTCGTTAAACCAGATGAAAGGCTTAATGATATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTACAGTACTGAGGCCGACATCTGGAGTATTGGTGTAATTGCATATATTTTATTATGTGGCAGCCGTCCGTTTTGGGCACGGACTGAATCAGGGATATTTCGTGCTGTATTGAAAGCCGATCCGAGTTTCGAAGAACCTCCTTGGCCTTCTCTGTCGGACGAAGCAAAGGATTTTGTAAAGCGACTTCTAAATAAAGATCCACGGAAAAGAATGACTGCTGCACAAGCATTAGGTCATCCATGGATTAAAAATTATAAGGATATGAAAGCACCTCTTGATATTCTAATTTTCAAGCTCATGAAGTCGTACATGCGCTCCTCATCTTTACGAAAAGCAGCTCTAAGGGCTTTGTCGAAGACATTAGCTGTTGACGAGCTGTGTTATTTGAAAGAGCAGTTTGCACTTTTAGAACCAAACAAAAACGGCACCATTAGCCTAGAAAATATCAAAGCGGCCTTGATGAAGAATGGAACCGATGCTATGAAGGAGTCACGCATTCCTGAATTTTTGGGATCCCTTAATGCATTGCAATTTAGAAGGATGGCTTTTGATGAGTTCTGTGCGGCAACTCTTAGTGTTCATCAACTGGAAGCCCTCTACCGGTGGGAGCAACATGCTCGCTGCGCCTATGAGCTTTTTGAAAAGGATGGAAACAGGGCTATAGTCATTGAGGAGCTAGCTTCGGAGCTAGGTCTTGGTCCCTCTGTCCCTGTTCACGCAGTTCTCCATGACTGGATTAGGCACACTGATGGAAAGCTAAGCTTCCTTGGGTTTGTCAAATTGCTGCATGGTCCGTCTCGAAGTCTCATGAAACCTCAATAG 1815 0.4678 MGLCVSKAPPESLSPSHNNNSKQESEEAVASSNGYNSSSVNGGVRSDAGKKTPFFPFYSPSPAHYLFSKKSPARSPVRTGSESTPRRFFKRPFPPPSPAKHIKAVLARRQGSVKPNSSSVAEGSVGGGGEEGVAVALDKSFGFSKHFKNKLEVGSEVGRGHFGYTCSAIFRKGELKGHHVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVKFYDAYEDQDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVLVQILNVVAFCHLQGVVHRDLKPENFLFASKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALGHPWIKNYKDMKAPLDILIFKLMKSYMRSSSLRKAALRALSKTLAVDELCYLKEQFALLEPNKNGTISLENIKAALMKNGTDAMKESRIPEFLGSLNALQFRRMAFDEFCAATLSVHQLEALYRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLMKPQ 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212130g00003 604 CDD STKc_CAMK 152 412 - -
Stsc212130g00003 604 MobiDBLite consensus disorder prediction 11 45 - -
Stsc212130g00003 604 Gene3D - 453 522 - -
Stsc212130g00003 604 FunFam CDPK-related kinase 1 144 239 - -
Stsc212130g00003 604 SUPERFAMILY Protein kinase-like (PK-like) 149 439 IPR011009 -
Stsc212130g00003 604 MobiDBLite consensus disorder prediction 1 46 - -
Stsc212130g00003 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Stsc212130g00003 604 Pfam Protein kinase domain 152 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212130g00003 604 ProSiteProfiles Protein kinase domain profile. 151 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212130g00003 604 SMART serkin_6 151 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212130g00003 604 Gene3D - 431 592 - -
Stsc212130g00003 604 FunFam Calcium-dependent protein kinase SK5 323 417 - -
Stsc212130g00003 604 MobiDBLite consensus disorder prediction 68 94 - -
Stsc212130g00003 604 Gene3D Transferase(Phosphotransferase) domain 1 240 428 - -
Stsc212130g00003 604 ProSitePatterns Protein kinases ATP-binding region signature. 157 183 IPR017441 GO:0005524
Stsc212130g00003 604 Gene3D Phosphorylase Kinase; domain 1 153 239 - -
Stsc212130g00003 604 FunFam CDPK-related kinase 3 143 315 - -
Stsc212130g00003 604 FunFam CDPK-related kinase 1 450 522 - -
Stsc212130g00003 604 PANTHER SERINE/THREONINE-PROTEIN KINASE 137 579 - -
Stsc212130g00003 604 SUPERFAMILY EF-hand 441 595 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212130g00003 Stsc-Chr212130 15745 22458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212130g00003 1 602 EF-hand Containing Proteins AT3G50530 73.635 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc212130g00003 Pkinase 4.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212130g00003 K13412 - vvi:100264733 964.911