Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc212127g00001 | ATGCCTAACAACTCTTTCTCCAACATCTTCTCCTTCTCCTCCTCCTCTTCCTCCTCGTCGCCGCCGCCACCTGCACCACCCCCACCCCTTTTCCAATTCAACCACCATTACTTTCCCTCTTCTTTACACCCTTATAATTACAACAACCACACCCTTTTCTCATCCACCACCAACACCTCCTCCACCTTCTTCCACTTCCACACTACTACTTCTACTGCACCTTATTCTTCTTCTTATTCATCTTCATCTACCATCACTACTTCACCTCCTTCCCCTCCTCTCAGGGAAGAACTTCCCCTTCTCACCCTTAGTCCCGCAAGACAACACCAAGCACTAGTACAACCTTCGGAAAACAACCACCACCACCACCAACACCCTCCTTCTTGCAGCACTTCCATGGATTTGGAGCTTAACGACGAGGACAACGAAGAAGAAGAAGACGATGCTGATGCTGATGCTGATGCAGATGCTACTACTGTGACTGTTGCACTCCACATAGGGCTTCCGAGCCCTAGTGCTGCCGAGATTGCATCCGTGCTATCCTCCTCCACCTCATCAGAGAAGGACCACGGCGAGGATTCAGGAGGTGGTGGTGGTGGTTTCATGAGTAACAAGCTGAACAAAGGACAGTACTGGATCCCAACACCATCACAGATTCTGATTGGTCCAACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGAAAAGGACCTGAATCATTAAGGGGAACTCAACCAACAGGGATGCTAAGGTTACCATGCTATTGTTGTGCACCAGGGTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACTCTTCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATCTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAGGCTTTTGGTTCTGGCCATGCTGCTTATGGTCTTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGATTAA | 1155 | 0.4727 | MPNNSFSNIFSFSSSSSSSSPPPPAPPPPLFQFNHHYFPSSLHPYNYNNHTLFSSTTNTSSTFFHFHTTTSTAPYSSSYSSSSTITTSPPSPPLREELPLLTLSPARQHQALVQPSENNHHHHQHPPSCSTSMDLELNDEDNEEEEDDADADADADATTVTVALHIGLPSPSAAEIASVLSSSTSSEKDHGEDSGGGGGGFMSNKLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGLDGFEEDDDPASEVEQDHD | 384 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc212127g00001 | 384 | SUPERFAMILY | beta-beta-alpha zinc fingers | 291 | 330 | IPR036236 | - | |
Stsc212127g00001 | 384 | FunFam | Zinc finger protein WIP2 | 279 | 361 | - | - | |
Stsc212127g00001 | 384 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 310 | 330 | IPR013087 | - | |
Stsc212127g00001 | 384 | Gene3D | Classic Zinc Finger | 225 | 248 | - | - | |
Stsc212127g00001 | 384 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 226 | 253 | IPR013087 | - | |
Stsc212127g00001 | 384 | MobiDBLite | consensus disorder prediction | 73 | 91 | - | - | |
Stsc212127g00001 | 384 | MobiDBLite | consensus disorder prediction | 136 | 154 | - | - | |
Stsc212127g00001 | 384 | PANTHER | ZINC FINGER PROTEIN WIP2 | 55 | 381 | IPR043584 | GO:0003700|GO:0010468 | |
Stsc212127g00001 | 384 | SMART | c2h2final6 | 310 | 330 | IPR013087 | - | |
Stsc212127g00001 | 384 | SMART | c2h2final6 | 226 | 248 | IPR013087 | - | |
Stsc212127g00001 | 384 | Gene3D | Classic Zinc Finger | 288 | 363 | - | - | |
Stsc212127g00001 | 384 | MobiDBLite | consensus disorder prediction | 177 | 202 | - | - | |
Stsc212127g00001 | 384 | MobiDBLite | consensus disorder prediction | 73 | 97 | - | - | |
Stsc212127g00001 | 384 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 228 | 248 | IPR013087 | - | |
Stsc212127g00001 | 384 | MobiDBLite | consensus disorder prediction | 114 | 154 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc212127g00001 | Stsc-Chr212127 | 11205 | 13156 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc212127g00001 | 61 | 381 | C2H2 Transcription Factor Family | AT3G57670 | 65.429 | 1.33e-143 | 411 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Stsc212127g00001 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc212127g00001 | - | - | gmx:100813583 | 461.84 |