Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212127g00001 ATGCCTAACAACTCTTTCTCCAACATCTTCTCCTTCTCCTCCTCCTCTTCCTCCTCGTCGCCGCCGCCACCTGCACCACCCCCACCCCTTTTCCAATTCAACCACCATTACTTTCCCTCTTCTTTACACCCTTATAATTACAACAACCACACCCTTTTCTCATCCACCACCAACACCTCCTCCACCTTCTTCCACTTCCACACTACTACTTCTACTGCACCTTATTCTTCTTCTTATTCATCTTCATCTACCATCACTACTTCACCTCCTTCCCCTCCTCTCAGGGAAGAACTTCCCCTTCTCACCCTTAGTCCCGCAAGACAACACCAAGCACTAGTACAACCTTCGGAAAACAACCACCACCACCACCAACACCCTCCTTCTTGCAGCACTTCCATGGATTTGGAGCTTAACGACGAGGACAACGAAGAAGAAGAAGACGATGCTGATGCTGATGCTGATGCAGATGCTACTACTGTGACTGTTGCACTCCACATAGGGCTTCCGAGCCCTAGTGCTGCCGAGATTGCATCCGTGCTATCCTCCTCCACCTCATCAGAGAAGGACCACGGCGAGGATTCAGGAGGTGGTGGTGGTGGTTTCATGAGTAACAAGCTGAACAAAGGACAGTACTGGATCCCAACACCATCACAGATTCTGATTGGTCCAACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGAAAAGGACCTGAATCATTAAGGGGAACTCAACCAACAGGGATGCTAAGGTTACCATGCTATTGTTGTGCACCAGGGTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACTCTTCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATCTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAGGCTTTTGGTTCTGGCCATGCTGCTTATGGTCTTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGATTAA 1155 0.4727 MPNNSFSNIFSFSSSSSSSSPPPPAPPPPLFQFNHHYFPSSLHPYNYNNHTLFSSTTNTSSTFFHFHTTTSTAPYSSSYSSSSTITTSPPSPPLREELPLLTLSPARQHQALVQPSENNHHHHQHPPSCSTSMDLELNDEDNEEEEDDADADADADATTVTVALHIGLPSPSAAEIASVLSSSTSSEKDHGEDSGGGGGGFMSNKLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGLDGFEEDDDPASEVEQDHD 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212127g00001 384 SUPERFAMILY beta-beta-alpha zinc fingers 291 330 IPR036236 -
Stsc212127g00001 384 FunFam Zinc finger protein WIP2 279 361 - -
Stsc212127g00001 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 330 IPR013087 -
Stsc212127g00001 384 Gene3D Classic Zinc Finger 225 248 - -
Stsc212127g00001 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Stsc212127g00001 384 MobiDBLite consensus disorder prediction 73 91 - -
Stsc212127g00001 384 MobiDBLite consensus disorder prediction 136 154 - -
Stsc212127g00001 384 PANTHER ZINC FINGER PROTEIN WIP2 55 381 IPR043584 GO:0003700|GO:0010468
Stsc212127g00001 384 SMART c2h2final6 310 330 IPR013087 -
Stsc212127g00001 384 SMART c2h2final6 226 248 IPR013087 -
Stsc212127g00001 384 Gene3D Classic Zinc Finger 288 363 - -
Stsc212127g00001 384 MobiDBLite consensus disorder prediction 177 202 - -
Stsc212127g00001 384 MobiDBLite consensus disorder prediction 73 97 - -
Stsc212127g00001 384 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Stsc212127g00001 384 MobiDBLite consensus disorder prediction 114 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212127g00001 Stsc-Chr212127 11205 13156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212127g00001 61 381 C2H2 Transcription Factor Family AT3G57670 65.429 1.33e-143 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc212127g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212127g00001 - - gmx:100813583 461.84