Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212119g00002 ATGGCAGCGAGTAGTTTGGAGAGTGTTTCAAGCCTTCTATGTGGAGAAGACAACAACAGCATCTTCGACGAAACTGATTATTACGGTGGTGGTGGTGGTGGTGGTTGTGCTTCCATCTTGTCGGAGGACACGTGGCATCATCCTATGTACAATCGAAATCATGAGGAGTTATTGTGGCAAGTAGTGCCACCACAAGAGCTTAGTGAAGAGTATTTGGCGTTAATGGTGGAGAAAGAGTGTCACCACTTGCCCTCCCAAGATTATCTTCATCGCCTCAGAAATGGGGATTTGGATTTTGGAGCCAGAAATCATGCCATTCATTGGATTCAAACGGTTCGAGAGCATTTTGGTTTTGGAGCCCTCTCTGCTTATCTATCCATAAATTACTTGGACCGTTTTCTTTCGGCATATGAATTACCAAAGCAAAGGGTTTGGACAATGCAGTTGTTAGCTGTGGCTTGTTTATCTCTTGCAGCAAAAATAGATGAGACTGATCTTCCTCTCTGCCTTGATTTGCAGGTTGGTGAGTTAAAGTTTGTATTTGAAGCTAAAACAATCCAAAGAATGGAGCTTATGGTACTTAGCACATTGAGGTGGAGAATGCAATCAATTACCCCATTCTCCTACATTGACTATTTCCTTTACAAGGTCAATGATGATCAAAATCCAATGAGGGTTTCAATTATGAGATCCATCCAACTTATTCTGAGTACTGTAAAAGGGATTGAATTCTTGGAGTTTAGACCATCAGAGATTGCAGCTGCTGTGGCAATAGCTGTAGTTAGGGAAACAAAAACAGTGCACATTGAGAAGGCTATTTCTGTTCTCAATCACCTAGTGGAAAAGGAGAGAGTGTTGAAATGTGTGAAACTAATACAAGAGTTGTCATCAAAGAGTGGTTTTACAAAGGACACAACAAGTGCTTCTGTTTCAGCCCCTTGCAATTGCATGCCCCAAAGTCCAATTGGGGTTTTGGATGGTGTGTGCTTAAGCTACAAAAGTGATGACATTAATGCTAATCCATCTTCTCATATTACTACTATAGATGCTAATAAAAGGAGGAAGCTAAATAATAATACCTATGCAGCAGCAGCAGCACCAGCGCCAGCATAG 1113 0.4151 MAASSLESVSSLLCGEDNNSIFDETDYYGGGGGGGCASILSEDTWHHPMYNRNHEELLWQVVPPQELSEEYLALMVEKECHHLPSQDYLHRLRNGDLDFGARNHAIHWIQTVREHFGFGALSAYLSINYLDRFLSAYELPKQRVWTMQLLAVACLSLAAKIDETDLPLCLDLQVGELKFVFEAKTIQRMELMVLSTLRWRMQSITPFSYIDYFLYKVNDDQNPMRVSIMRSIQLILSTVKGIEFLEFRPSEIAAAVAIAVVRETKTVHIEKAISVLNHLVEKERVLKCVKLIQELSSKSGFTKDTTSASVSAPCNCMPQSPIGVLDGVCLSYKSDDINANPSSHITTIDANKRRKLNNNTYAAAAAPAPA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212119g00002 370 CDD CYCLIN_AtCycD-like_rpt1 101 199 - -
Stsc212119g00002 370 Gene3D - 85 202 - -
Stsc212119g00002 370 Gene3D - 74 290 - -
Stsc212119g00002 370 PANTHER CYCLINS 65 298 IPR039361 -
Stsc212119g00002 370 SMART Cyclin_C_2 204 320 IPR004367 -
Stsc212119g00002 370 Pfam Cyclin, C-terminal domain 204 300 IPR004367 -
Stsc212119g00002 370 CDD CYCLIN_AtCycD-like_rpt2 204 292 - -
Stsc212119g00002 370 FunFam D2/4-type cyclin 85 197 - -
Stsc212119g00002 370 FunFam D6-type cyclin 198 290 - -
Stsc212119g00002 370 SMART cyclin_7 107 195 IPR013763 -
Stsc212119g00002 370 Pfam Cyclin, N-terminal domain 72 201 IPR006671 -
Stsc212119g00002 370 SUPERFAMILY Cyclin-like 64 201 IPR036915 -
Stsc212119g00002 370 ProSitePatterns Cyclins signature. 102 133 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212119g00002 Stsc-Chr212119 16981 20424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212119g00002 11 336 Core Cell Cycle Gene Families AT2G22490 43.413 1.53e-78 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212119g00002 K18810 - gmx:100803873 418.698