Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212117g00004 ATGTGGGATCTGAATGACTCTCCCGACAAGAGAAACAACTATGACTCTCAACAAGCTTCTTCTTCACCCATGGACGATGACGTCAGAGGCAAGACCCTCCGATCTGCCTCCAATTCCAGCTCCTCTGCCGTCCTCTTAGAAGACGGATCCGAAGAAGATGAAGAGCAAGCCAGCAGAACAACAACGCTCAACAAAGGCACCAGCAGCAGCAAGATATTCGGCTTCTCCGTCGCTCCCATGGACGGCGACGACAACCCCCCCGTGACTCACCAGTTTTTCCCGGTGAAGGACTCCGGCTCTGGCGGAGGAGGAGGAGGAGGAAGCTCGTCGTCGTCGTCGTTCCCTCGAGCTCACTGGGTTGGCGTGAAGTTCTGCCAATCGGAAGCAGTAGTTGGCGGCGGTGGAAAATCGTCAGGCGCGGTGGAAGTATCTCAGCCTATGAAGAAGAGCCGGAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTGACCTTTTACAGAAGAACGGGTCGTTGGGAATCTCATATTTGGGATTGTGGAAAACAAGTCTATCTGGGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCAATTAAGTTCCGGGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAGGAAGACTTGAAGCAGATGACGAATTTAACAAAGGAAGAATTTGTGCACGTACTTCGGCGACAAAGCACTGGCTTTCCAAGAGGGAGTTCCAAATATAGAGGTGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTCTCTTTGACACTGAGATTGAAGCTGCCAGGGCTTATGACAAAGCAGCAATCAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTACGAAAACGAGCTTAATTCTGAATCGTCAGGAGGCAATGGTGCAGGAGATCACAATCTGGATCTAAGTTTGGGCAATCCAAGTTCTAAGCATGGCAATAATCAAGCACCGGGGACAGCTGATCACCGTATGACATCTAATTGGCACAACGACGGCACCAATAATAAGCACAAGCTGGTGAATATACTACCAAAACCATGTAGTAGTGGTAGTGGTAGAAGCAACATAGAGCAGAATGGAGGACAGCGTGAGAGTGAAGGGATGGCGATGAGGCTGCTAAGTCATCAAACTCATCATTTTCATAATCAAACTCCTCCACTCTCCAATGAAATGCATAGATACGGTCCTTATTACAGGTCCCATGCACCTGGAGACCCTCCTCCTCCTCAAATGCTTCACGCTTTTCCATCACCTAATTTCCATTTTCCCACCGGCAGCAGCAAGGGAGGCCGAATTGGAAGTGAACTTTCACTGTCTTCAATGAGCGATCAAGAACATTTACAGTGGCAAGCAGGAGCTGCTGGAGTAGGGCCTCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCGCCGCAGATATTAACACCCTCCCAAGGTTGGATCCACAAAAATGGCTTCCACACTCTCATGAGACCCTCCTCTTAA 1590 0.4937 MWDLNDSPDKRNNYDSQQASSSPMDDDVRGKTLRSASNSSSSAVLLEDGSEEDEEQASRTTTLNKGTSSSKIFGFSVAPMDGDDNPPVTHQFFPVKDSGSGGGGGGGSSSSSSFPRAHWVGVKFCQSEAVVGGGGKSSGAVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGGNGAGDHNLDLSLGNPSSKHGNNQAPGTADHRMTSNWHNDGTNNKHKLVNILPKPCSSGSGRSNIEQNGGQRESEGMAMRLLSHQTHHFHNQTPPLSNEMHRYGPYYRSHAPGDPPPPQMLHAFPSPNFHFPTGSSKGGRIGSELSLSSMSDQEHLQWQAGAAGVGPPHLLATAAAASSGFPPQILTPSQGWIHKNGFHTLMRPSS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212117g00004 529 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 Pfam AP2 domain 251 300 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Stsc212117g00004 529 CDD AP2 251 311 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Stsc212117g00004 529 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700|GO:0006355
Stsc212117g00004 529 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700|GO:0006355
Stsc212117g00004 529 MobiDBLite consensus disorder prediction 133 160 - -
Stsc212117g00004 529 SMART rav1_2 252 315 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 MobiDBLite consensus disorder prediction 11 25 - -
Stsc212117g00004 529 FunFam AP2-like ethylene-responsive transcription factor 251 311 - -
Stsc212117g00004 529 SUPERFAMILY DNA-binding domain 251 311 IPR016177 GO:0003677
Stsc212117g00004 529 MobiDBLite consensus disorder prediction 316 366 - -
Stsc212117g00004 529 CDD AP2 160 217 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 MobiDBLite consensus disorder prediction 1 114 - -
Stsc212117g00004 529 MobiDBLite consensus disorder prediction 60 74 - -
Stsc212117g00004 529 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Stsc212117g00004 529 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 84 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212117g00004 Stsc-Chr212117 27469 30926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212117g00004 1 343 AP2-EREBP Transcription Factor Family AT4G36920 69.886 3.90e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc212117g00004 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212117g00004 K09284 - gmx:100786333 657.907