Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212117g00001 ATGGAGGGTGAAGGAGGAGGAGAGAGAGGGACGAGGAAGAGAGTGGCGGAGAGTGGAGGCGGAGAGAGAAGGTATAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTCGCTGAGATTAGAGAACCAAACAAGCGTTCAAGGATTTGGCTCGGTTCATACTCAACCCCTATCGCCGCCGCAAGAGCCTACGACACCGCCGTCTTCTACCTCAGGGGACCCTCCGCACGCCTCAACTTCCCCGAGTTTCTCGCCGGAGAACCCCCTCCTTCCCTCCTCGGCGCCTGCGACATGTCCGCCGCTTCCATAAGGAAGAAAGCCACCGAGGTCGGCGCCAGAGTCGATGCCCTCCAGGCCGCCACCCTGCACCACCACCTGGCTCCGCCACAGCAGGAGCTTATATCGGGGCGGTCAGGAGATTTTGCGGAGCGGGTTGATTTGAACAAGATACCAGAACCCGAAGATTGTGAATGGGAGATGAAATGA 486 0.5823 MEGEGGGERGTRKRVAESGGGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPEFLAGEPPPSLLGACDMSAASIRKKATEVGARVDALQAATLHHHLAPPQQELISGRSGDFAERVDLNKIPEPEDCEWEMK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212117g00001 161 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Stsc212117g00001 161 MobiDBLite consensus disorder prediction 1 21 - -
Stsc212117g00001 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 19 157 - -
Stsc212117g00001 161 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Stsc212117g00001 161 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Stsc212117g00001 161 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Stsc212117g00001 161 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Stsc212117g00001 161 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Stsc212117g00001 161 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Stsc212117g00001 161 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Stsc212117g00001 161 FunFam Ethylene-responsive transcription factor 2 23 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212117g00001 Stsc-Chr212117 7130 7615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212117g00001 1 161 AP2-EREBP Transcription Factor Family AT5G67190 53.608 1.95e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc212117g00001 AP2 3.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212117g00001 K09286 - gmx:100527066 228.409