Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212114g00004 ATGAGCTTCCTTCAGGGGATCATCGATTCCTTCAACTCCGTCTTCTCTTCTGATCCTTCTTCCTCTTCTCATTCTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAATCTCACCTTAATTCCACCTCAATGGAAGCTGCTTCTTCCTCTCCTTCTTCAGTTTCCAACGAGCGCGTCGCTTTCAAGCTCAAAGGTTACTACGATTTGGCCACTCAGGAGATCGCAAAGGCGGTTCGAGCCGAAGAGTGGGGTTTGCTTGACGACGCTATTCTTCACTACAAGAACGCTCACAGGATCCTCCTTGAAGCCCATTCTACCCCTGTCCCTTCCTTCATCACTTCCAGTGAACAAGCAAAGGTGCAATCTTATCGTCAGAAGATATCGAAATGGCAGGGCCAAGTATCTGAGAGATTACAGGCTCTAAGTAGACGAGCAGGAAGCTCATCTGCCAATCAGAGCACCTCAAACCTTGCACAAACTGCTGCAGTTCCACTTAAGCCATCAAATGGTAGAAAAAATGTGGTACAAAGGTATTCTCAACCAACAGGGCAGGTGAATAACGTTGGAAGCCCAAAATCTAGTCAAGCTGGTGTAAATTATGATTCAAAACTGGTTGAAATGATTAACACTGCAATAGTAGATAGAAGTCCTTCTGTTAGATGGGATGATGTTGCTGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGGAGAGACTTATTCACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTACTCTTCGGTCCACCTGGTAATGGAAAGACCATGCTTGCCAAAGCTGTAGCTTCAGAATCTGATGCAACATTTTTCAATGTCTCCTCTGCATCACTGACATCGAAATGGGTGGGTGAAGCTGAAAAACTTGTAAGGACGCTATTCTCGGTCGCTGTATCCAGGCAGCCGTCTGTGATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGAACGGAAAATGAGAATGATGCAAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATAGTAATGATATTGTGATTGTAATCGGTGCAACCAACAAACCACAGGAATTGGATGATGCAGTTCTTAGGAGGCTGGTAAAGAGAATCTATGTGCCTCTACCTGATGAAAATGTTCGGAGACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCATTACCGAGCAGAGATCTGGCAAGACTTGTTAGAGAGACAGAAGGTTATTCTGGAAGTGATCTTCAAGCATTATGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGATCTAACATTCTTACTGTTAATGCAAATCAGGTAAGAGGACTAACCTATGATGATTTCAAGAAGGCAATGACTGTCATCAGACCAAGCTTAAAGAAAAGCAAGTGGGAAGAGCTGGAGCGCTGGAATGAGGAGTTTGGCTCTAATTGA 1503 0.4365 MSFLQGIIDSFNSVFSSDPSSSSHSSPPPSSSSSSSSSSSSSQSHLNSTSMEAASSSPSSVSNERVAFKLKGYYDLATQEIAKAVRAEEWGLLDDAILHYKNAHRILLEAHSTPVPSFITSSEQAKVQSYRQKISKWQGQVSERLQALSRRAGSSSANQSTSNLAQTAAVPLKPSNGRKNVVQRYSQPTGQVNNVGSPKSSQAGVNYDSKLVEMINTAIVDRSPSVRWDDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESDATFFNVSSASLTSKWVGEAEKLVRTLFSVAVSRQPSVIFIDEIDSIMSTRTENENDASRRLKSEFLIQFDGVTSNSNDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPSRDLARLVRETEGYSGSDLQALCEEAAMMPIRELGSNILTVNANQVRGLTYDDFKKAMTVIRPSLKKSKWEELERWNEEFGSN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212114g00004 500 PANTHER AAA DOMAIN-CONTAINING 107 499 - -
Stsc212114g00004 500 Pfam ATPase family associated with various cellular activities (AAA) 265 395 IPR003959 GO:0005524|GO:0016887
Stsc212114g00004 500 MobiDBLite consensus disorder prediction 149 168 - -
Stsc212114g00004 500 Gene3D - 396 478 - -
Stsc212114g00004 500 CDD MIT_spastin 70 148 - -
Stsc212114g00004 500 SMART AAA_5 261 397 IPR003593 GO:0016887
Stsc212114g00004 500 FunFam AAA-type ATPase family protein 63 152 - -
Stsc212114g00004 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 497 IPR027417 -
Stsc212114g00004 500 FunFam AAA-type ATPase family protein 396 478 - -
Stsc212114g00004 500 Pfam AAA+ lid domain 420 451 IPR041569 -
Stsc212114g00004 500 FunFam Spastin, putative 224 407 - -
Stsc212114g00004 500 ProSitePatterns AAA-protein family signature. 367 386 IPR003960 GO:0005524|GO:0016887
Stsc212114g00004 500 SMART smart 70 147 IPR007330 -
Stsc212114g00004 500 CDD RecA-like_spastin 230 393 - -
Stsc212114g00004 500 Gene3D - 224 494 IPR027417 -
Stsc212114g00004 500 MobiDBLite consensus disorder prediction 15 58 - -
Stsc212114g00004 500 Gene3D - 63 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212114g00004 Stsc-Chr212114 17069 21311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212114g00004 219 450 Calmodulin-binding Proteins AT3G56690 42.083 1.08e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212114g00004 K13254 - gmx:100780946 778.474