Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212113g00001 ATGAGTGATAACATAGCTTCTTCACAACAAGCCTTTGATATCAAGTACAATAGTATCACATTTTCTTCACCAAGTGGAAACTCTTCTTCTTCTTCTCACCAACATCATCATAATAATCAAGATTATGGGGTTATCAAAGAGCAAGATCGGTTGCTTCCAATTGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCAACAAATGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTTTCTGAGTTCATAAGCTTTGTGACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGTGATGATATTTGTTGGGCCTTGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGTACTTGCTTAAGTTTAGGGAATTGGAATGTGAAAAAGCTAATAATCAACATAATAATAATAGGGTTATTAATACTACTACCAATAATAATAATCTTCTCGAAAAATATAATAGTTTCGGAGGCGAAGACGAAGAATAA 525 0.3657 MSDNIASSQQAFDIKYNSITFSSPSGNSSSSSHQHHHNNQDYGVIKEQDRLLPIANVGRIMKQILPTNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRELECEKANNQHNNNRVINTTTNNNNLLEKYNSFGGEDEE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212113g00001 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Stsc212113g00001 174 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Stsc212113g00001 174 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Stsc212113g00001 174 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Stsc212113g00001 174 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc212113g00001 174 Gene3D Histone, subunit A 40 171 IPR009072 GO:0046982
Stsc212113g00001 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc212113g00001 174 SUPERFAMILY Histone-fold 48 154 IPR009072 GO:0046982
Stsc212113g00001 174 FunFam Nuclear transcription factor Y subunit B-3 39 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212113g00001 Stsc-Chr212113 1616 2494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212113g00001 28 144 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.441 3.46e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc212113g00001 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212113g00001 K08065 - csav:115707280 201.06