Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212107g00002 ATGCCTATTCGCTTCTTCAAGATCATACTCAAAACCAACCTTAAAAGGCTTAAATTACCCAACAAGTTTGCAAGGAAATATGGAGGTGGCTTGCCCAACCAAGTGTTCTTAAAGCCTCCCGATGGAACAAGATGGAAGGTGTGTTTGACTAAAAAGAATGGTCAAGTTTGGTTTGAAAAGGGTTGGAAAGAATTTACTCAAAACTACTCTCTGGATCATGGATTCCTGGTTCTGTTTAAATATGAAGGAACTACTTCTTCTTCCTCTTCTTCTTCCCATTTTGATGTCCTTATCATTGACAACACTGCTTTAGAAATAGACTATCCTTCCAACAATGGAAAAAATAGTGATGATGATGTTTCAGTTCAGATTCTGAAGGAAACCAAGAAAGAAAAATTGCTTCCATCATCTTCTCATAAAAACATGAGAGGTGAGAAGAATGTCTCTGCTGCTTCTTCTCTGTCATTGAATTGGCCAAAGGAACCAAGAGCACAAGAAGTAGCTAAGAAATTCGTATCACACAACCCCTTTTTCACGGTGCTCATAAAGCCTTATCATCTCACACATCACCTAGTGACCATACCAAGTTTGGAAGGTTATGCGGGGAAGGAGGTGAAGAATGTGAAGCTTGAGAATGGGGATAGATTGTGGCCTGTGAAGATGCTTTGTTGTAACAAAAGCTATTCAAGTCGATGCCTTTCTGCTGGGTGGAACTCGTTTGCGAGAGAGACTGAGTTGAAGCCTGGAGATGTTTGTGTCTTTGAACTTGTTAATATGCAAGATTTGGTGTTCAAGGTTCATGTTTTTGCTAGCCAAGCTTAA 822 0.399 MPIRFFKIILKTNLKRLKLPNKFARKYGGGLPNQVFLKPPDGTRWKVCLTKKNGQVWFEKGWKEFTQNYSLDHGFLVLFKYEGTTSSSSSSSHFDVLIIDNTALEIDYPSNNGKNSDDDVSVQILKETKKEKLLPSSSHKNMRGEKNVSAASSLSLNWPKEPRAQEVAKKFVSHNPFFTVLIKPYHLTHHLVTIPSLEGYAGKEVKNVKLENGDRLWPVKMLCCNKSYSSRCLSAGWNSFARETELKPGDVCVFELVNMQDLVFKVHVFASQA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212107g00002 273 CDD B3_DNA 177 269 IPR003340 GO:0003677
Stsc212107g00002 273 SMART B3_2 177 272 IPR003340 GO:0003677
Stsc212107g00002 273 SMART B3_2 5 102 IPR003340 GO:0003677
Stsc212107g00002 273 SUPERFAMILY DNA-binding pseudobarrel domain 4 101 IPR015300 -
Stsc212107g00002 273 CDD B3_DNA 4 100 IPR003340 GO:0003677
Stsc212107g00002 273 Gene3D - 159 272 IPR015300 -
Stsc212107g00002 273 SUPERFAMILY DNA-binding pseudobarrel domain 173 270 IPR015300 -
Stsc212107g00002 273 ProSiteProfiles B3 DNA-binding domain profile. 177 272 IPR003340 GO:0003677
Stsc212107g00002 273 Pfam B3 DNA binding domain 12 86 IPR003340 GO:0003677
Stsc212107g00002 273 Pfam B3 DNA binding domain 177 270 IPR003340 GO:0003677
Stsc212107g00002 273 PANTHER B3 DOMAIN-CONTAINING 4 266 - -
Stsc212107g00002 273 Gene3D - 2 103 IPR015300 -
Stsc212107g00002 273 ProSiteProfiles B3 DNA-binding domain profile. 2 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212107g00002 Stsc-Chr212107 6957 8235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212107g00002 1 269 B3 DNA Binding Superfamily AT3G18990 29.155 4.77e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc212107g00002 B3 7.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212107g00002 - - adu:107467238 345.125