Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212105g00002 ATGAGAGAACAAGAACAAGAACTAAACCTTATGTCTTATGATAGAGTAGAATGCAACCTAAGGGATTCTGATGAGCTTCTATTGGTGGATCGTGATCTGGCATCTGAAACTAATGATACTCTGGAGAACGGGCCTTTTATGCACAACATGAATGCTACGAAAGCTGATAAATGGAAGTCTACTTCAAGGTTTGGCGGCTCTGAACAATGTAAAGATAATACACAAACTGGTGCTCATGTAAAAGATAAAAAATCTGTTGGAGAACATGTATGTCTGCAGTGCTTGCGTGGTGGTGAACTGCTTTGCTGCTTTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTTTGAATCCTCCTCTCAATTACTACCCTGTGGGCTTTTGGAATTGTGCATGGTGTGTTAAGAAAAAGCTAGTTCTTGGTGTGTACTCCATTTCTGAAGGGGTGGAGTCCATCTTGGATACTAGAGAAGGCATTATAAACAATGTGACAGAAAAGGAGTACTTTGTCAAGTATTTGGGCCTTGCTCATGCTCACAACCGCTGGATTCTAGAAACACAAATGCTTTTAGAGGCGCCAAAGGTTTTGTCAAAGTTTAAGAGGATGCCCAAGGTTATCAAGTGGAAGAGAGAATGGAGTATACCTCACCGCTTGCTGCTAAAAAGAGCAATTGTATTACCAAAGAAAAATGAAGAACGTTTAGATGGGCATGATAACAATGATTCAGTTAGCTGCTTTGAATGGCTTGTAAAGTGGTCTGGTCTTGGATATGATCATATTACATGGGAACTCGATAGTGCTTTTTTTTTTACGTCATCTGAAGGCATGAAACTCAAAAAAGATTATGTAAGTCGTCGAAAGGGGATGGGTGGACTTCCAAATTCTTCTGACTCTAAAGAGGAGAGAAAAGCTTCCTTTGCTGAGTTATCAGTACCGCCTTCGGGTGATTCACCGGTAGTTCCTAATCAGCATTTGAGTTATGTGAACAAGCTTTGCACGTGTTGGCACAAAGGTCAGAGTGCTGTCGTTGTAGACGATAAGATTGACCAGGAGCGGGTTATGAAGTTGATTTCATTTATATTGTCATTGCACTGTAAGGTGACAAGGCCTTTCCTCATCATCTCCACTTCTTCTGCTCTTGCTGTGTGGGAAAGAGAATTCTCACATTTAGCTCCATCTGCAAATCTAGTCATTTACAAGGGAAACAAAGATGTACGGAGAAGCATCAGGACCTTGGAGTTTTATAACGATGACAATGGCATCTTATTTCAAATATTATTATCATCATCTGATATTGTTGTTGAGGACTTAAATGAACTACAATGCATTTCATGGGAAGCAATAATAATCGATGAATGCCAGCGACCTAGAATGTTAGAACACCTTGACATTATCAAGATTCTGACAACTGTGTTGAGGATCTTGGTTGTTAGTGCGCAGATCAAGGAAGATCGAGCTGATTATATCAAACTGCTTTCCTTCCTCAAGTCTGGAAGTCATGTGTTAAATACTACTGAAACAGAGCCTTATGTCTCTGATAGCATTTCCAATTTGAAAACCAAATTTGATCAATATGTGGCATTTAGAAGCAAAATCTGGTCCCCTAAGTTTGCAGAGTTTTGGGTTCCTGCCAAGCTTTCCAATTTGCAGCTTGAGCAGTATTGTTCATTGCTGCTTTCTGACAGAACTCTGCTATGCTCAGCCCAAAAGTCCGACAAAGTCAATGCCCTCCATGGCCTCCTTAAATCAATAAGGAAGTGCTGCAACCACCCCTTTCTCGTGGACCGGTCACTTTATGATTCTGTCAATAAAGGTCTGTCTATTGAAGAGCAGTTGAATATTGGGATAAAAGCAAGTGGCAAATTGCAGCTTCTTGAAAATCTCCTTTTGAAAGCAAGAAGTCGTGGGTTCAGAGTGATGATATTATTTCAGTCAACTAGTGATTCGACATCAATTGGGGATATTTTGGATGATGTGCTTTGTCGGAGATTTGGTGAAGATTGTTATGTACGATATGCTGCTGGGTATGCCCCCAAAGTGAAACAAAGTGCTCTAGACAGATTTAATGATGGAGAAAAGGGAACATTTGTCTTCTTATTGGAAAGCCGTGCTTGTCTCCCTAGTGTTAAACTTTCCTCCGTTGATGCCATTATATTATTTGACAGTGATTGTGACCCAGAAAATGATTTAAGAGCCTTACAACGGATGCCTATAAGCTCACAGTTTGAACAGTTAGTAGTGTTTAGACTATACTCATCTTTTACTGTTGAAGAAAAGGTTCTAATGCTTGCCAAAGAGGGTAGTAGTATCCAGTTGATTAACCATAATACCTCGCATGCTCTGCTAAGATGGGGGATCACCTGTCTATTCAATAGTCTTGATGACTTACATGGCAGTAACACCTCAGTTGTTGCTCAAGATATTGCCTCGGATCAGTCATTTCTACATGACGTAATTTCTGAGTTATCAGTCATATTGGCTTGTGGCAGTGGTGACATAGATCATCATGGATTGTCCTTCATAGCAAGAGTACAGCAAAAAGGAGGGGAATATGCAAGGAACATTTTATTGCATGGGGAAAAAGTGTTGAAGAAATTGGGCGATGGTTTTGATGTTTTTTCTTGGAGTAATCTCCTTCAGGGAAAGAGTCCTAGATGGAAATTTTTGTCAGTTCCATCTCAAAGGATCAGGAAGCCTGTCAACCACTTTGATCCCAAACCAAAGGAATCTGAAAATGAAAATGATGCTGATATTAGAAAGAAGAGGAAAGTGCCTGAGAATAAAGTTGATACCAAAAGGAAGGAAGTGTCCAAGGATACTACTGTCACTAAGAAGGGGAAAGTGCCAGACCATGCCAATTCCAAATATTCGAAAAAAAGTTCGAAGAACAAGAAGCTAAACACTTGTATCACAGATGAGTTGTTGCCAAAGCCAGATTTAACAGTTCTTTGTGATGTTCTACAACTTCCGGAAAATATCAAGGCTGTTGGTGCAAGGCTTCTTGAGTTCATATTGAAAGAGTTCAATGTTAATTGTCCAGATGATTCTACCATGCAGGCATTTGAGTTATCTGTGTGTTGGCTTGCGGCTTCGTTATTGAAGCACAAATTTGATAAGCAAGGTTCACTTGCACTTGCGAAAGTGCACTTGAACTTCAATTGCGAGGAAGAGGAAGTAACCAATGTTTACTCTAAACTGCTGAACTTTAAGGAGAAATTTTCAAGTTTTTTACAAAGTGGAATTTGTGTTGAGAAATGTACATCAGACTGTGAGGCACCTGATGGGTTGACAGATTTGGTGGAGCATATGCAAAATGGTTTTCCGGGTCCTCATGTATCAGATCCCGTAGAATCCGATACGTATAGACAAGATCTTGAAAGAGAATCTCCCACAACTGTGTTAGCTACTCATTACCAGGCTTATGCAGAAAATTTTCAAATCAGACCAACAGATATTGATAGTTGTCCTCAAAAGTCATCTGGTACTTTCCCTGTCGAAGCGGAAGCTATCCCCATGAAATCCAAAGCTTCTTTCCTGGAACATCAGAGCGGGGTCATCAATTCAAGTGATGATCCTCATAATGTCAATCCTGCCCCAGGTTCTTTGGGAAATCCAATTAATGGCAATGATTCTGAAGTGCCTCTAATAAATACGAACGAAGTGGTTGAGACAAGTGCTCGCAGAACTGCTGATGTTCGTGAGGCCAACCAGCGTTATAGTGTAGTGAGTGCCGTCCATGGCGAGTCTATTATGAATTTGGCTGGGATTACCTTACCACATACTGATCTACCGCCATCGCCTCTGGTGGATGTTCCATCTTTTGTGGAGAATATTTCAATTGCTGAAGTCTTGGCTTCTGATGAAAATTTTGGTGAACATTTTAACCTTAACATTCCTGACGGTGAACCAACATTACAAGCACCAGATGACCTAGATGAATCAGTCCCAGACTCACTGCAAACTGAAATGGAGAGAATAATAAAGGAGACTGAAGAAGCTAAGAAGATACGTGACCAAAAGTTACTCCAGCTTGAGTCGGACCATGGTAATGAGGTTCAAGAGTTGGTTGCAAAGTATCAAACGTTGCTTCGGAATATCAGTACTGAATTCGCACATCAAAAAAAGGAACTTAATACATATTATAAAACAGTTAGTTTGAATATGTTGTTGGCGGAGGTTTTGGACAACAATAACGAGGAATGTATAAGAGAAGCAGTTCTATTCGGAGAACAAGGCTTACCCTTTGCAACGGGAACTCCTAGCTCCTCAAGTACTCAACTTAGAGAGAATCATCCCCCATTTATGCCTGATCAAGGACTTGAACAGCATCTGCCGATAATTCCGCCACGCTTGTTTACTCCATCAAAGGTGGTTAATGCTTTGGAGATGGTTAATACTTCAACGGCCATTCCAGATGGAGAATGTATTGATCCCATGATTCAGTCCCTCTTAAACTTTAATTATGACTGTGATTCAATGGCCTCAGACCCTCCTCTCGGAGCCTCTAGTTCAGTGCCCATCATGCCAGATCCAAGTAGTGGAACACCAGAACAAGAATTGCCAATACATTTATACTTAAATGACAATGTGAGTAATTCATAG 4605 0.4061 MREQEQELNLMSYDRVECNLRDSDELLLVDRDLASETNDTLENGPFMHNMNATKADKWKSTSRFGGSEQCKDNTQTGAHVKDKKSVGEHVCLQCLRGGELLCCFGKGCQRRYHPSCLNPPLNYYPVGFWNCAWCVKKKLVLGVYSISEGVESILDTREGIINNVTEKEYFVKYLGLAHAHNRWILETQMLLEAPKVLSKFKRMPKVIKWKREWSIPHRLLLKRAIVLPKKNEERLDGHDNNDSVSCFEWLVKWSGLGYDHITWELDSAFFFTSSEGMKLKKDYVSRRKGMGGLPNSSDSKEERKASFAELSVPPSGDSPVVPNQHLSYVNKLCTCWHKGQSAVVVDDKIDQERVMKLISFILSLHCKVTRPFLIISTSSALAVWEREFSHLAPSANLVIYKGNKDVRRSIRTLEFYNDDNGILFQILLSSSDIVVEDLNELQCISWEAIIIDECQRPRMLEHLDIIKILTTVLRILVVSAQIKEDRADYIKLLSFLKSGSHVLNTTETEPYVSDSISNLKTKFDQYVAFRSKIWSPKFAEFWVPAKLSNLQLEQYCSLLLSDRTLLCSAQKSDKVNALHGLLKSIRKCCNHPFLVDRSLYDSVNKGLSIEEQLNIGIKASGKLQLLENLLLKARSRGFRVMILFQSTSDSTSIGDILDDVLCRRFGEDCYVRYAAGYAPKVKQSALDRFNDGEKGTFVFLLESRACLPSVKLSSVDAIILFDSDCDPENDLRALQRMPISSQFEQLVVFRLYSSFTVEEKVLMLAKEGSSIQLINHNTSHALLRWGITCLFNSLDDLHGSNTSVVAQDIASDQSFLHDVISELSVILACGSGDIDHHGLSFIARVQQKGGEYARNILLHGEKVLKKLGDGFDVFSWSNLLQGKSPRWKFLSVPSQRIRKPVNHFDPKPKESENENDADIRKKRKVPENKVDTKRKEVSKDTTVTKKGKVPDHANSKYSKKSSKNKKLNTCITDELLPKPDLTVLCDVLQLPENIKAVGARLLEFILKEFNVNCPDDSTMQAFELSVCWLAASLLKHKFDKQGSLALAKVHLNFNCEEEEVTNVYSKLLNFKEKFSSFLQSGICVEKCTSDCEAPDGLTDLVEHMQNGFPGPHVSDPVESDTYRQDLERESPTTVLATHYQAYAENFQIRPTDIDSCPQKSSGTFPVEAEAIPMKSKASFLEHQSGVINSSDDPHNVNPAPGSLGNPINGNDSEVPLINTNEVVETSARRTADVREANQRYSVVSAVHGESIMNLAGITLPHTDLPPSPLVDVPSFVENISIAEVLASDENFGEHFNLNIPDGEPTLQAPDDLDESVPDSLQTEMERIIKETEEAKKIRDQKLLQLESDHGNEVQELVAKYQTLLRNISTEFAHQKKELNTYYKTVSLNMLLAEVLDNNNEECIREAVLFGEQGLPFATGTPSSSSTQLRENHPPFMPDQGLEQHLPIIPPRLFTPSKVVNALEMVNTSTAIPDGECIDPMIQSLLNFNYDCDSMASDPPLGASSSVPIMPDPSSGTPEQELPIHLYLNDNVSNS 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212105g00002 1534 MobiDBLite consensus disorder prediction 899 960 - -
Stsc212105g00002 1534 Coils Coil 1320 1340 - -
Stsc212105g00002 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 768 IPR027417 -
Stsc212105g00002 1534 SMART PHD_3 90 135 IPR001965 -
Stsc212105g00002 1534 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 94 1400 - -
Stsc212105g00002 1534 SUPERFAMILY Chromo domain-like 241 286 IPR016197 -
Stsc212105g00002 1534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 150 IPR013083 -
Stsc212105g00002 1534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 625 791 IPR001650 -
Stsc212105g00002 1534 Gene3D - 151 203 - -
Stsc212105g00002 1534 ProSiteProfiles Zinc finger PHD-type profile. 88 137 IPR019787 -
Stsc212105g00002 1534 Gene3D - 325 535 IPR038718 -
Stsc212105g00002 1534 MobiDBLite consensus disorder prediction 900 958 - -
Stsc212105g00002 1534 Gene3D - 1317 1396 - -
Stsc212105g00002 1534 ProSiteProfiles Chromo and chromo shadow domain profile. 148 202 IPR000953 -
Stsc212105g00002 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 500 IPR027417 -
Stsc212105g00002 1534 SMART chromo_7 212 285 IPR000953 -
Stsc212105g00002 1534 SMART chromo_7 147 205 IPR000953 -
Stsc212105g00002 1534 MobiDBLite consensus disorder prediction 1498 1522 - -
Stsc212105g00002 1534 SUPERFAMILY FYVE/PHD zinc finger 81 138 IPR011011 -
Stsc212105g00002 1534 Gene3D - 226 272 - -
Stsc212105g00002 1534 SUPERFAMILY Chromo domain-like 109 202 IPR016197 -
Stsc212105g00002 1534 ProSiteProfiles Chromo and chromo shadow domain profile. 230 264 IPR000953 -
Stsc212105g00002 1534 Pfam SNF2-related domain 355 592 IPR000330 GO:0005524|GO:0140658
Stsc212105g00002 1534 Gene3D - 536 768 IPR027417 -
Stsc212105g00002 1534 ProSitePatterns Zinc finger PHD-type signature. 91 134 IPR019786 -
Stsc212105g00002 1534 MobiDBLite consensus disorder prediction 290 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212105g00002 Stsc-Chr212105 12488 28351 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc212105g00002 SNF2_N 3.9e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212105g00002 - K11643 gmx:100813574 1166.76